miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 650 0.66 0.634299
Target:  5'- gGCUuccgGGGCgcggCCGGGgCGGGCU--CCGCGg -3'
miRNA:   3'- -CGA----CCUG----GGCCUgGCCCGGuuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 1838 0.76 0.157477
Target:  5'- cGCcGGGCCgaggGGACCGaGGCCGccGCCGCGg -3'
miRNA:   3'- -CGaCCUGGg---CCUGGC-CCGGU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 1911 0.73 0.263912
Target:  5'- --aGGACgaGGACCGGGCCGAggGCGa -3'
miRNA:   3'- cgaCCUGggCCUGGCCCGGUUggCGC- -5'
29393 5' -62.8 NC_006151.1 + 2099 0.75 0.20478
Target:  5'- -aUGGGCCCgagcGGGCCgcgGGGCCGGCCGUc -3'
miRNA:   3'- cgACCUGGG----CCUGG---CCCGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 2178 0.67 0.576198
Target:  5'- gGCcGGcCCCGGcgcCCGaGGCCc-CCGCGg -3'
miRNA:   3'- -CGaCCuGGGCCu--GGC-CCGGuuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 2615 0.71 0.358228
Target:  5'- aGCgGGACCgGGGuCCgGGGCCcGgCGCGg -3'
miRNA:   3'- -CGaCCUGGgCCU-GG-CCCGGuUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 2854 0.71 0.329041
Target:  5'- -gUGGuaguCCCccacGGCCGGGCCGuCCGCGg -3'
miRNA:   3'- cgACCu---GGGc---CUGGCCCGGUuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 3472 0.67 0.585826
Target:  5'- gGCaUGGGCCCGaGcgggcGCCGGaGCCggUCGUc -3'
miRNA:   3'- -CG-ACCUGGGC-C-----UGGCC-CGGuuGGCGc -5'
29393 5' -62.8 NC_006151.1 + 3543 0.67 0.528702
Target:  5'- aGCgGGGUCCGGAgCGGGCCcgaguccgagggAGCgGCGc -3'
miRNA:   3'- -CGaCCUGGGCCUgGCCCGG------------UUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 3721 0.79 0.101033
Target:  5'- cGCUcGGGCgCUGGGuCCGGGCCGGCgGCGg -3'
miRNA:   3'- -CGA-CCUG-GGCCU-GGCCCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 3839 0.72 0.315119
Target:  5'- gGCUGGaggGCCCGGAgCCGGGgaGGCCGg- -3'
miRNA:   3'- -CGACC---UGGGCCU-GGCCCggUUGGCgc -5'
29393 5' -62.8 NC_006151.1 + 3897 0.66 0.605167
Target:  5'- cGCUGGGacgacgaggCCGGGCugcuCGGGCCAGa-GCGg -3'
miRNA:   3'- -CGACCUg--------GGCCUG----GCCCGGUUggCGC- -5'
29393 5' -62.8 NC_006151.1 + 3957 0.79 0.112757
Target:  5'- cGC-GGGCCCGGGCCGcGcggcggccucggcgaGCCGGCCGCGg -3'
miRNA:   3'- -CGaCCUGGGCCUGGC-C---------------CGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 4126 0.67 0.557055
Target:  5'- cCUGccgccGCUCGG-CCGGGCCGGCCcCGg -3'
miRNA:   3'- cGACc----UGGGCCuGGCCCGGUUGGcGC- -5'
29393 5' -62.8 NC_006151.1 + 4315 0.67 0.557055
Target:  5'- cGCgGGGCaCGcGGCCGGGCUgcgcGGCgGCGa -3'
miRNA:   3'- -CGaCCUGgGC-CUGGCCCGG----UUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 4786 0.71 0.357476
Target:  5'- --cGGGCCCGG-CCGcGGCgCGguagcggGCCGCGg -3'
miRNA:   3'- cgaCCUGGGCCuGGC-CCG-GU-------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 4903 0.66 0.644015
Target:  5'- --cGGAgCCGGGCCaGGGCUccCCgaGCGg -3'
miRNA:   3'- cgaCCUgGGCCUGG-CCCGGuuGG--CGC- -5'
29393 5' -62.8 NC_006151.1 + 5024 0.78 0.117328
Target:  5'- gGCUccgGGGCCgGGGCCGGGgaGGCCGCGg -3'
miRNA:   3'- -CGA---CCUGGgCCUGGCCCggUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 5637 0.71 0.33617
Target:  5'- cGCcGGGCgCCGaGACCGGcCCGGCgGCGg -3'
miRNA:   3'- -CGaCCUG-GGC-CUGGCCcGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 5725 0.7 0.38918
Target:  5'- uGCUGGuggcGCCgGGGuCCGaGGCCGcGCCGCc -3'
miRNA:   3'- -CGACC----UGGgCCU-GGC-CCGGU-UGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.