miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 122876 1.1 0.000685
Target:  5'- uGCUGGACCCGGACCGGGCCAACCGCGa -3'
miRNA:   3'- -CGACCUGGGCCUGGCCCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 3721 0.79 0.101033
Target:  5'- cGCUcGGGCgCUGGGuCCGGGCCGGCgGCGg -3'
miRNA:   3'- -CGA-CCUG-GGCCU-GGCCCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 18769 0.79 0.102818
Target:  5'- uGCccgGGGCCCGGGCCGGGgCCGucagcuccuugaugACCGUGa -3'
miRNA:   3'- -CGa--CCUGGGCCUGGCCC-GGU--------------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 3957 0.79 0.112757
Target:  5'- cGC-GGGCCCGGGCCGcGcggcggccucggcgaGCCGGCCGCGg -3'
miRNA:   3'- -CGaCCUGGGCCUGGC-C---------------CGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 5024 0.78 0.117328
Target:  5'- gGCUccgGGGCCgGGGCCGGGgaGGCCGCGg -3'
miRNA:   3'- -CGA---CCUGGgCCUGGCCCggUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 36490 0.78 0.117328
Target:  5'- cGCgaggggGGACCCGGucggugagcCCGGGCCGGCgGCGc -3'
miRNA:   3'- -CGa-----CCUGGGCCu--------GGCCCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 106362 0.78 0.123285
Target:  5'- cGCUGGACgCGGGCgCGcGCCcGCCGCGg -3'
miRNA:   3'- -CGACCUGgGCCUG-GCcCGGuUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 134816 0.78 0.129521
Target:  5'- cGCcGGACCCGGACgGuGG-CGACCGCGc -3'
miRNA:   3'- -CGaCCUGGGCCUGgC-CCgGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 55063 0.77 0.139423
Target:  5'- gGCgaGGACCCGG--CGGGCuCGGCCGCGg -3'
miRNA:   3'- -CGa-CCUGGGCCugGCCCG-GUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 1838 0.76 0.157477
Target:  5'- cGCcGGGCCgaggGGACCGaGGCCGccGCCGCGg -3'
miRNA:   3'- -CGaCCUGGg---CCUGGC-CCGGU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 99129 0.76 0.172171
Target:  5'- uGCUGGACCCcgGGGCgCaGGCCGugcacguggccgccGCCGCGg -3'
miRNA:   3'- -CGACCUGGG--CCUG-GcCCGGU--------------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 126387 0.76 0.173415
Target:  5'- aGC-GGGCCCGcGCUGcuGGCCAGCCGCGu -3'
miRNA:   3'- -CGaCCUGGGCcUGGC--CCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 118744 0.76 0.177618
Target:  5'- uGCUGGGCCCGGcgGCCGuGCCAcgCGCGu -3'
miRNA:   3'- -CGACCUGGGCC--UGGCcCGGUugGCGC- -5'
29393 5' -62.8 NC_006151.1 + 50869 0.75 0.195348
Target:  5'- cGCgcc-CCCGGACCccgucccgGGGCCGGCCGCGc -3'
miRNA:   3'- -CGaccuGGGCCUGG--------CCCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 73713 0.75 0.195348
Target:  5'- uGCUGGGCCaCGGGCUGGcGC--ACCGUGg -3'
miRNA:   3'- -CGACCUGG-GCCUGGCC-CGguUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 6103 0.75 0.2043
Target:  5'- uGCUGGGCCgaaggaGGACgGGGCggccucguggcucCGGCCGCGg -3'
miRNA:   3'- -CGACCUGGg-----CCUGgCCCG-------------GUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 2099 0.75 0.20478
Target:  5'- -aUGGGCCCgagcGGGCCgcgGGGCCGGCCGUc -3'
miRNA:   3'- cgACCUGGG----CCUGG---CCCGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 140189 0.75 0.20478
Target:  5'- cGCUGGACCCc-AUCGuGGCC-ACCGCGg -3'
miRNA:   3'- -CGACCUGGGccUGGC-CCGGuUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 102049 0.74 0.214605
Target:  5'- aGCUGGcCCCGcucGACCuGGGCCcGCUGCa -3'
miRNA:   3'- -CGACCuGGGC---CUGG-CCCGGuUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 131106 0.74 0.214605
Target:  5'- gGCgggGGGCCCGG-CCGcGGCgCGggagGCCGCGg -3'
miRNA:   3'- -CGa--CCUGGGCCuGGC-CCG-GU----UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.