miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 20767 0.66 0.595485
Target:  5'- cGCggcGGACgCGcGCCGGGCgAGCgGCu -3'
miRNA:   3'- -CGa--CCUGgGCcUGGCCCGgUUGgCGc -5'
29393 5' -62.8 NC_006151.1 + 21351 0.73 0.269924
Target:  5'- gGCUGGAacggcuCCgCGGGCUGcGGCCAcCCGCu -3'
miRNA:   3'- -CGACCU------GG-GCCUGGC-CCGGUuGGCGc -5'
29393 5' -62.8 NC_006151.1 + 21543 0.71 0.33617
Target:  5'- gGCcgGGGCCgGGGCCuGGGCCu-CgGCGa -3'
miRNA:   3'- -CGa-CCUGGgCCUGG-CCCGGuuGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 22523 0.67 0.585826
Target:  5'- cGCgggGGAgUCGGGCgGGGCCGGgUcagGCGg -3'
miRNA:   3'- -CGa--CCUgGGCCUGgCCCGGUUgG---CGC- -5'
29393 5' -62.8 NC_006151.1 + 22780 0.67 0.528702
Target:  5'- uGCUGGGCCuCGcGcacguGCUGGGCCGucuccccgGCCGUc -3'
miRNA:   3'- -CGACCUGG-GC-C-----UGGCCCGGU--------UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 23901 0.71 0.329041
Target:  5'- gGCUGGGCgUCGGuCgCGGGCCcgacgGGCCGCc -3'
miRNA:   3'- -CGACCUG-GGCCuG-GCCCGG-----UUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 27361 0.72 0.315119
Target:  5'- gGCcgGGGCCCGGG-CGGGUCGACgGgCGa -3'
miRNA:   3'- -CGa-CCUGGGCCUgGCCCGGUUGgC-GC- -5'
29393 5' -62.8 NC_006151.1 + 27559 0.69 0.456083
Target:  5'- gGCUGGGCUgGGACgGGGgCCGGgUGgGu -3'
miRNA:   3'- -CGACCUGGgCCUGgCCC-GGUUgGCgC- -5'
29393 5' -62.8 NC_006151.1 + 27604 0.66 0.634299
Target:  5'- cGCc-GACCCGGaACCGGacccgagcCCGGCCGCc -3'
miRNA:   3'- -CGacCUGGGCC-UGGCCc-------GGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 28234 0.67 0.557055
Target:  5'- --gGGGgCCGGGCCgacGGGCCcauuGGCCGgGg -3'
miRNA:   3'- cgaCCUgGGCCUGG---CCCGG----UUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 28274 0.68 0.518438
Target:  5'- -gUGGGCCCcggGGACgCGGGCCcggcucccccauuGGCCgGCGc -3'
miRNA:   3'- cgACCUGGG---CCUG-GCCCGG-------------UUGG-CGC- -5'
29393 5' -62.8 NC_006151.1 + 28482 0.67 0.566605
Target:  5'- cGCUGGAugcgugccaaguCCCGGGaaGGGggcgguCCGGcCCGCGg -3'
miRNA:   3'- -CGACCU------------GGGCCUggCCC------GGUU-GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 28833 0.66 0.623609
Target:  5'- uGC-GGGCCCcggGGACgCGGGCCcggcucccccauuGGCCgGCGc -3'
miRNA:   3'- -CGaCCUGGG---CCUG-GCCCGG-------------UUGG-CGC- -5'
29393 5' -62.8 NC_006151.1 + 29217 0.67 0.566605
Target:  5'- gGgUGGGgaUGGgucaccGCCGGGUCGGCCGCGc -3'
miRNA:   3'- -CgACCUggGCC------UGGCCCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 31220 0.67 0.576198
Target:  5'- gGCcGGGCCCccGGCC-GGCCGGCCcgGCGa -3'
miRNA:   3'- -CGaCCUGGGc-CUGGcCCGGUUGG--CGC- -5'
29393 5' -62.8 NC_006151.1 + 31682 0.72 0.301648
Target:  5'- --aGGGCCgGGccGCCGaGCCGGCCGCGc -3'
miRNA:   3'- cgaCCUGGgCC--UGGCcCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 33312 0.69 0.430252
Target:  5'- cGCgugGGACCgGGACCGGGaCAGgggGCGg -3'
miRNA:   3'- -CGa--CCUGGgCCUGGCCCgGUUgg-CGC- -5'
29393 5' -62.8 NC_006151.1 + 34591 0.67 0.576198
Target:  5'- gGCUGGGgcgccCUCGGAgCGcGcGCCGAgCGCGa -3'
miRNA:   3'- -CGACCU-----GGGCCUgGC-C-CGGUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 35224 0.67 0.538098
Target:  5'- aUUGG-CCCGGgcgaGCCGagauGGCCG-CCGCGg -3'
miRNA:   3'- cGACCuGGGCC----UGGC----CCGGUuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 36319 0.71 0.358228
Target:  5'- --cGGGcCCCGGucCCGGGCCGGCUcCGg -3'
miRNA:   3'- cgaCCU-GGGCCu-GGCCCGGUUGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.