miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 3' -56.2 NC_006151.1 + 4701 0.68 0.758431
Target:  5'- -uCGCCGGcGGCCccGCUguagaUGAGgCGCACg -3'
miRNA:   3'- cuGCGGCU-CCGGa-UGAa----ACUC-GCGUG- -5'
29394 3' -56.2 NC_006151.1 + 5366 0.66 0.885717
Target:  5'- cGGCGCCGgcgGGGCUgucuCUgcGGGgGCGCc -3'
miRNA:   3'- -CUGCGGC---UCCGGau--GAaaCUCgCGUG- -5'
29394 3' -56.2 NC_006151.1 + 6394 0.66 0.863719
Target:  5'- cGAgGCCGGGcGCCgagcGCggaGAGCGgGCg -3'
miRNA:   3'- -CUgCGGCUC-CGGa---UGaaaCUCGCgUG- -5'
29394 3' -56.2 NC_006151.1 + 7043 0.66 0.855949
Target:  5'- -uCGCCcGGGCCaa---UGGGCGCGCg -3'
miRNA:   3'- cuGCGGcUCCGGaugaaACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 10932 0.71 0.574668
Target:  5'- cGGCGCCGAGGg------UGGGCGCGCg -3'
miRNA:   3'- -CUGCGGCUCCggaugaaACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 14104 0.66 0.847162
Target:  5'- cGACGCCGAcGGggaucgaCCgggagagGCgcgGAGCGCGCc -3'
miRNA:   3'- -CUGCGGCU-CC-------GGa------UGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 18298 0.68 0.748693
Target:  5'- aGACGUCGAagccggagcgggGcGCCUcCUcgGGGCGCACg -3'
miRNA:   3'- -CUGCGGCU------------C-CGGAuGAaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 18665 0.67 0.814119
Target:  5'- gGGCGUCGuccGGCCgUACggguuccacGGGCGCGCg -3'
miRNA:   3'- -CUGCGGCu--CCGG-AUGaaa------CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 18750 0.67 0.831418
Target:  5'- -cCGCCGGGGCCccACg--GGGUGCcCg -3'
miRNA:   3'- cuGCGGCUCCGGa-UGaaaCUCGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 18980 0.67 0.839791
Target:  5'- gGGCuGCaCGAGGCgUACgcgcGGCGCGCc -3'
miRNA:   3'- -CUG-CG-GCUCCGgAUGaaacUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 19277 0.66 0.863719
Target:  5'- uGGCGCgCGGGGCCcACcg-GGGCcagcgGCGCg -3'
miRNA:   3'- -CUGCG-GCUCCGGaUGaaaCUCG-----CGUG- -5'
29394 3' -56.2 NC_006151.1 + 26355 0.68 0.768055
Target:  5'- cGGCGgCG-GGCC-GCgucgGGGCGCGCg -3'
miRNA:   3'- -CUGCgGCuCCGGaUGaaa-CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 27209 0.75 0.385056
Target:  5'- aGGCGCCGGGGCCccGCgcgccgugGAcGCGCACc -3'
miRNA:   3'- -CUGCGGCUCCGGa-UGaaa-----CU-CGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 31625 0.67 0.805211
Target:  5'- gGAUGCCGc-GCCgGCac-GAGCGCACg -3'
miRNA:   3'- -CUGCGGCucCGGaUGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 31747 0.75 0.376681
Target:  5'- cGCGCCGGGgacgcGCCUGCggcggcGGGCGCGCg -3'
miRNA:   3'- cUGCGGCUC-----CGGAUGaaa---CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 34586 0.68 0.777554
Target:  5'- cGACcgGCUGGGGCgccCUcgGAGCGCGCg -3'
miRNA:   3'- -CUG--CGGCUCCGgauGAaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 36382 0.68 0.777554
Target:  5'- aGAgGCCGGGGCCcccgGCggccccGGGCGCuCg -3'
miRNA:   3'- -CUgCGGCUCCGGa---UGaaa---CUCGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 37843 0.71 0.574668
Target:  5'- uACGCCGAcauGGCCUACcc-GGGcCGCGCc -3'
miRNA:   3'- cUGCGGCU---CCGGAUGaaaCUC-GCGUG- -5'
29394 3' -56.2 NC_006151.1 + 39850 0.66 0.885717
Target:  5'- -cCGCCGGGGCCU-CgccGAGCucCGCg -3'
miRNA:   3'- cuGCGGCUCCGGAuGaaaCUCGc-GUG- -5'
29394 3' -56.2 NC_006151.1 + 39933 0.75 0.376681
Target:  5'- cGACGCCGAGGCCgccccgcuggUGCUgaccccGGGCGC-Cg -3'
miRNA:   3'- -CUGCGGCUCCGG----------AUGAaa----CUCGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.