miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 3' -56.2 NC_006151.1 + 121963 1.09 0.002346
Target:  5'- cGACGCCGAGGCCUACUUUGAGCGCACc -3'
miRNA:   3'- -CUGCGGCUCCGGAUGAAACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 135812 0.83 0.11795
Target:  5'- cGCGCCGAGGCCgaGCUUUuAGCGCGCc -3'
miRNA:   3'- cUGCGGCUCCGGa-UGAAAcUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 105256 0.78 0.253678
Target:  5'- -uCGCCugggacGAGGCCUgggaggACUUUGGGCGCGCg -3'
miRNA:   3'- cuGCGG------CUCCGGA------UGAAACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 122473 0.76 0.355488
Target:  5'- gGGCGCCGAGGCCggggACgcgGgcgagacggcgcgccGGCGCGCg -3'
miRNA:   3'- -CUGCGGCUCCGGa---UGaaaC---------------UCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 90053 0.75 0.36843
Target:  5'- cGAUGCCGAGGCgCgcCUcgGuGCGCACg -3'
miRNA:   3'- -CUGCGGCUCCG-GauGAaaCuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 61481 0.75 0.36843
Target:  5'- aACGCCGAGGCCg----UGAGCugGCGCu -3'
miRNA:   3'- cUGCGGCUCCGGaugaaACUCG--CGUG- -5'
29394 3' -56.2 NC_006151.1 + 39933 0.75 0.376681
Target:  5'- cGACGCCGAGGCCgccccgcuggUGCUgaccccGGGCGC-Cg -3'
miRNA:   3'- -CUGCGGCUCCGG----------AUGAaa----CUCGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 95571 0.75 0.376681
Target:  5'- cGACGCCGAGGCCgagGCgcuccaGGCGCuCg -3'
miRNA:   3'- -CUGCGGCUCCGGa--UGaaac--UCGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 31747 0.75 0.376681
Target:  5'- cGCGCCGGGgacgcGCCUGCggcggcGGGCGCGCg -3'
miRNA:   3'- cUGCGGCUC-----CGGAUGaaa---CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 27209 0.75 0.385056
Target:  5'- aGGCGCCGGGGCCccGCgcgccgugGAcGCGCACc -3'
miRNA:   3'- -CUGCGGCUCCGGa-UGaaa-----CU-CGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 76712 0.74 0.446999
Target:  5'- cGCGCCGcGGCCgcCUUUuaaugcaugaugGAGCGCGCg -3'
miRNA:   3'- cUGCGGCuCCGGauGAAA------------CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 113607 0.74 0.460042
Target:  5'- cGugGCCGAGcGCCaggcggacccgcgcgUGCUcuUUGAGCGCGg -3'
miRNA:   3'- -CugCGGCUC-CGG---------------AUGA--AACUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 93600 0.73 0.472332
Target:  5'- cGCGCCGAuGGCCUgcagcagccgguccGCgcUGuAGCGCACg -3'
miRNA:   3'- cUGCGGCU-CCGGA--------------UGaaAC-UCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 119053 0.73 0.484785
Target:  5'- cGGCGCCGcGGCCgcCUccgcGGGCGCGCc -3'
miRNA:   3'- -CUGCGGCuCCGGauGAaa--CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 99995 0.72 0.514099
Target:  5'- uGGCGCgCGAGGaCCUgACggUG-GCGCACg -3'
miRNA:   3'- -CUGCG-GCUCC-GGA-UGaaACuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 85709 0.72 0.514099
Target:  5'- -uCGUCGuGGCCUACcgcgcggacGAGCGCACg -3'
miRNA:   3'- cuGCGGCuCCGGAUGaaa------CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 68279 0.72 0.534037
Target:  5'- cGGCGCCGGGcGCCacgGCggccaGGCGCGCg -3'
miRNA:   3'- -CUGCGGCUC-CGGa--UGaaac-UCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 98350 0.72 0.534037
Target:  5'- aGACGCCcgcGGGCgUGCgcgggcucUGGGCGCGCg -3'
miRNA:   3'- -CUGCGGc--UCCGgAUGaa------ACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 78699 0.72 0.543099
Target:  5'- --gGCCGGGGCCUcgucgccgcgacgGCgcccgugGGGCGCGCg -3'
miRNA:   3'- cugCGGCUCCGGA-------------UGaaa----CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 104547 0.72 0.544109
Target:  5'- cGAgGCCGAgcuGGCC-GCccUGGGCGCGCg -3'
miRNA:   3'- -CUgCGGCU---CCGGaUGaaACUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.