miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 3' -56.2 NC_006151.1 + 55452 0.72 0.554243
Target:  5'- cGGCGCCGccGGCCccGCcgggGGGCGCGCg -3'
miRNA:   3'- -CUGCGGCu-CCGGa-UGaaa-CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 71187 0.72 0.557294
Target:  5'- gGGCGCCGucauGGCCUcgcaggaGCUcguguccgugaccgUGGGCGCGCg -3'
miRNA:   3'- -CUGCGGCu---CCGGA-------UGAa-------------ACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 10932 0.71 0.574668
Target:  5'- cGGCGCCGAGGg------UGGGCGCGCg -3'
miRNA:   3'- -CUGCGGCUCCggaugaaACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 37843 0.71 0.574668
Target:  5'- uACGCCGAcauGGCCUACcc-GGGcCGCGCc -3'
miRNA:   3'- cUGCGGCU---CCGGAUGaaaCUC-GCGUG- -5'
29394 3' -56.2 NC_006151.1 + 130291 0.71 0.584947
Target:  5'- gGGCGCgCGccGGCCgacgGCgcgGAGCGCGCg -3'
miRNA:   3'- -CUGCG-GCu-CCGGa---UGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 85064 0.71 0.584947
Target:  5'- cGGCGCUGcAGGCCUGC---GGGCGCc- -3'
miRNA:   3'- -CUGCGGC-UCCGGAUGaaaCUCGCGug -5'
29394 3' -56.2 NC_006151.1 + 69756 0.71 0.605603
Target:  5'- cGAcCGCCGGGGCC-ACgcgccGCGCGCg -3'
miRNA:   3'- -CU-GCGGCUCCGGaUGaaacuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 56326 0.7 0.636719
Target:  5'- --aGCCuGGGCCggugGCUg-GAGCGCGCg -3'
miRNA:   3'- cugCGGcUCCGGa---UGAaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 104036 0.7 0.636719
Target:  5'- aGCGCgCGcAGcGCCaGCUcUGGGCGCGCg -3'
miRNA:   3'- cUGCG-GC-UC-CGGaUGAaACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 100422 0.7 0.636719
Target:  5'- cGACGCgGGGGCgCUGCgcggcgUGAugGCGCAg -3'
miRNA:   3'- -CUGCGgCUCCG-GAUGaa----ACU--CGCGUg -5'
29394 3' -56.2 NC_006151.1 + 63163 0.7 0.647095
Target:  5'- cACGCgguaCGGGGCCUug---GGGCGCACg -3'
miRNA:   3'- cUGCG----GCUCCGGAugaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 105332 0.7 0.657458
Target:  5'- --gGCCGAGGCCcGCgc-GcGCGCGCu -3'
miRNA:   3'- cugCGGCUCCGGaUGaaaCuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 135092 0.7 0.657458
Target:  5'- gGGCGgCGGGGCCgggcggGCggcgGuAGCGCGCg -3'
miRNA:   3'- -CUGCgGCUCCGGa-----UGaaa-C-UCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 138073 0.7 0.677084
Target:  5'- cGGCGCggaaccgCGAGGCCUuCUUcGcccGGCGCACg -3'
miRNA:   3'- -CUGCG-------GCUCCGGAuGAAaC---UCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 81892 0.7 0.678114
Target:  5'- cGGCGCCGAGGCgCgcCggucgcGGCGCGCc -3'
miRNA:   3'- -CUGCGGCUCCG-GauGaaac--UCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 81597 0.7 0.678114
Target:  5'- -uCGCCGGGGCCgcc----GGCGCGCa -3'
miRNA:   3'- cuGCGGCUCCGGaugaaacUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 139646 0.7 0.678114
Target:  5'- cGGCGCgGGGGUC-GCggcGGGCGCGCc -3'
miRNA:   3'- -CUGCGgCUCCGGaUGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 77785 0.69 0.688388
Target:  5'- uACGCCgugaacGAGGCCUGCUUcgcgcuggUGcaGGCGUACc -3'
miRNA:   3'- cUGCGG------CUCCGGAUGAA--------AC--UCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 54412 0.69 0.688388
Target:  5'- cGGCGCCGAGGC--GCU---GGCGCGg -3'
miRNA:   3'- -CUGCGGCUCCGgaUGAaacUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 89545 0.69 0.689413
Target:  5'- aGCGCCGAGGCCgguggaggccgcgagGCUgaUGGGCaCGCc -3'
miRNA:   3'- cUGCGGCUCCGGa--------------UGAa-ACUCGcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.