miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 3' -56.2 NC_006151.1 + 103048 0.66 0.863719
Target:  5'- cGCGCUGcuGGCCgagGCgca-GGCGCACg -3'
miRNA:   3'- cUGCGGCu-CCGGa--UGaaacUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 104610 0.66 0.863719
Target:  5'- cGGCGCCGAGaUCUGCc----GCGCGCu -3'
miRNA:   3'- -CUGCGGCUCcGGAUGaaacuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 138161 0.66 0.863719
Target:  5'- cGCGCuCGAGGCCUucg-UG-GCGgACg -3'
miRNA:   3'- cUGCG-GCUCCGGAugaaACuCGCgUG- -5'
29394 3' -56.2 NC_006151.1 + 72263 0.66 0.862951
Target:  5'- cGACGCCGAgcggcguGGCCagcaUGCggUGcGGCGuCACg -3'
miRNA:   3'- -CUGCGGCU-------CCGG----AUGaaAC-UCGC-GUG- -5'
29394 3' -56.2 NC_006151.1 + 65172 0.66 0.862182
Target:  5'- cGGCGCgCGAGGCggaaGCgcggguccgcGAGCGCGCu -3'
miRNA:   3'- -CUGCG-GCUCCGga--UGaaa-------CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 121168 0.66 0.862182
Target:  5'- aGACgGCCGuguacgcGGCCgUGCUgcacgcgcucgGGGCGCGCa -3'
miRNA:   3'- -CUG-CGGCu------CCGG-AUGAaa---------CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 105700 0.66 0.860636
Target:  5'- cGACGCCGGcgcGGCCgcgcgccucgacgGCgccGuGCGCGCg -3'
miRNA:   3'- -CUGCGGCU---CCGGa------------UGaaaCuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 65492 0.66 0.855949
Target:  5'- cACGCCGcGGacGCCgGCg--GAGCGCGCc -3'
miRNA:   3'- cUGCGGC-UC--CGGaUGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 73704 0.66 0.855949
Target:  5'- uGCGCCGcgugcuGGGCCacggGCU---GGCGCACc -3'
miRNA:   3'- cUGCGGC------UCCGGa---UGAaacUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 7043 0.66 0.855949
Target:  5'- -uCGCCcGGGCCaa---UGGGCGCGCg -3'
miRNA:   3'- cuGCGGcUCCGGaugaaACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 98631 0.66 0.847971
Target:  5'- uGCGCCgccuucgacGAGGCC--CUggcGGGCGCGCg -3'
miRNA:   3'- cUGCGG---------CUCCGGauGAaa-CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 105456 0.66 0.847971
Target:  5'- cGCGCCGGGGCCc----UGGGCG-ACu -3'
miRNA:   3'- cUGCGGCUCCGGaugaaACUCGCgUG- -5'
29394 3' -56.2 NC_006151.1 + 135411 0.66 0.847971
Target:  5'- -uCGCCgGAGGCCUcg--UG-GCGCGCc -3'
miRNA:   3'- cuGCGG-CUCCGGAugaaACuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 91077 0.66 0.847971
Target:  5'- --aGUCGAGGCC-GCgggcGAGCGCGa -3'
miRNA:   3'- cugCGGCUCCGGaUGaaa-CUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 102649 0.66 0.847971
Target:  5'- cGGCGCuCGAGGCCgcccacgccaACUUUGA-CGC-Cg -3'
miRNA:   3'- -CUGCG-GCUCCGGa---------UGAAACUcGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 137493 0.66 0.847971
Target:  5'- cGACGCCGcccucGCCgACUUUG-GCGcCGCg -3'
miRNA:   3'- -CUGCGGCuc---CGGaUGAAACuCGC-GUG- -5'
29394 3' -56.2 NC_006151.1 + 142138 0.66 0.847971
Target:  5'- uGGCGcCCGAuGCCUGCgcc-GGCGCAg -3'
miRNA:   3'- -CUGC-GGCUcCGGAUGaaacUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 14104 0.66 0.847162
Target:  5'- cGACGCCGAcGGggaucgaCCgggagagGCgcgGAGCGCGCc -3'
miRNA:   3'- -CUGCGGCU-CC-------GGa------UGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 130644 0.67 0.839791
Target:  5'- -cCGCCGAGGCCgcCUgc-GGCGUgaACg -3'
miRNA:   3'- cuGCGGCUCCGGauGAaacUCGCG--UG- -5'
29394 3' -56.2 NC_006151.1 + 120774 0.67 0.839791
Target:  5'- cGGCGCCcgcuggcggacGcGGCCgACgcgGAGCGCGCc -3'
miRNA:   3'- -CUGCGG-----------CuCCGGaUGaaaCUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.