miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 3' -56.2 NC_006151.1 + 66864 0.67 0.839791
Target:  5'- --gGCCGGGGCg-GCgcgaaGGGCGCGCc -3'
miRNA:   3'- cugCGGCUCCGgaUGaaa--CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 75138 0.67 0.839791
Target:  5'- cGGCGgCGcGGCCcaGCgc-GGGCGCACg -3'
miRNA:   3'- -CUGCgGCuCCGGa-UGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 100227 0.67 0.839791
Target:  5'- gGGCGCCGuGGCC------GAGCGCGu -3'
miRNA:   3'- -CUGCGGCuCCGGaugaaaCUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 120774 0.67 0.839791
Target:  5'- cGGCGCCcgcuggcggacGcGGCCgACgcgGAGCGCGCc -3'
miRNA:   3'- -CUGCGG-----------CuCCGGaUGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 130644 0.67 0.839791
Target:  5'- -cCGCCGAGGCCgcCUgc-GGCGUgaACg -3'
miRNA:   3'- cuGCGGCUCCGGauGAaacUCGCG--UG- -5'
29394 3' -56.2 NC_006151.1 + 70636 0.67 0.839791
Target:  5'- cGGCGCCGuGGCCgcGCgc-GAG-GCGCc -3'
miRNA:   3'- -CUGCGGCuCCGGa-UGaaaCUCgCGUG- -5'
29394 3' -56.2 NC_006151.1 + 64489 0.67 0.831418
Target:  5'- gGACGCCcgcGGGCgCggGCggcGGGCGCGCg -3'
miRNA:   3'- -CUGCGGc--UCCG-Ga-UGaaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 113322 0.67 0.831418
Target:  5'- cACGCUGGGGCCcgUGCU---GGCGCugGCg -3'
miRNA:   3'- cUGCGGCUCCGG--AUGAaacUCGCG--UG- -5'
29394 3' -56.2 NC_006151.1 + 18750 0.67 0.831418
Target:  5'- -cCGCCGGGGCCccACg--GGGUGCcCg -3'
miRNA:   3'- cuGCGGCUCCGGa-UGaaaCUCGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 64947 0.67 0.831418
Target:  5'- aGCGCCu-GGCCgcGCUgcGGGCGCAg -3'
miRNA:   3'- cUGCGGcuCCGGa-UGAaaCUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 82617 0.67 0.831418
Target:  5'- cGCGCgCGGGcGCC-GCggUGGGCGCGg -3'
miRNA:   3'- cUGCG-GCUC-CGGaUGaaACUCGCGUg -5'
29394 3' -56.2 NC_006151.1 + 100250 0.67 0.831418
Target:  5'- uGGCGCuCGAGcGCCUcuucaccugccGCUUcgucuuccgcGGGCGCACg -3'
miRNA:   3'- -CUGCG-GCUC-CGGA-----------UGAAa---------CUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 100481 0.67 0.831418
Target:  5'- aGGCGCUG-GGCCUGCa---GGCGCcCg -3'
miRNA:   3'- -CUGCGGCuCCGGAUGaaacUCGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 118416 0.67 0.831418
Target:  5'- aACGCCGAGGagaCgacggGCgcggaggUGuGCGCGCg -3'
miRNA:   3'- cUGCGGCUCCg--Ga----UGaa-----ACuCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 63490 0.67 0.83057
Target:  5'- cGGCGcCCGAagaagguGGCCaGgUggGGGCGCGCg -3'
miRNA:   3'- -CUGC-GGCU-------CCGGaUgAaaCUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 134477 0.67 0.822857
Target:  5'- gGACgGCCGccacuGGGCCUACgucuucGGGCGCuCg -3'
miRNA:   3'- -CUG-CGGC-----UCCGGAUGaaa---CUCGCGuG- -5'
29394 3' -56.2 NC_006151.1 + 102610 0.67 0.822857
Target:  5'- gGGCGCuCGAgcgGGCgcGCgacgUGAGCGCGCu -3'
miRNA:   3'- -CUGCG-GCU---CCGgaUGaa--ACUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 140297 0.67 0.822857
Target:  5'- uGCGCCGGcgccGCCUGCgg-GAcGUGCGCu -3'
miRNA:   3'- cUGCGGCUc---CGGAUGaaaCU-CGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 66074 0.67 0.817635
Target:  5'- gGACgGCCGccugggcuuccacgcGGGCCUGC----AGCGCGCg -3'
miRNA:   3'- -CUG-CGGC---------------UCCGGAUGaaacUCGCGUG- -5'
29394 3' -56.2 NC_006151.1 + 134004 0.67 0.814119
Target:  5'- aGCGCgGGGGCC-ACc---AGCGCGCa -3'
miRNA:   3'- cUGCGgCUCCGGaUGaaacUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.