miRNA display CGI


Results 41 - 60 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 138199 0.66 0.768123
Target:  5'- cCGUGCUGCggcaccUCgACGCGCacuucaacggGCG-CGCg -3'
miRNA:   3'- cGCACGGCGa-----AGgUGCGCG----------CGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 86731 0.66 0.768123
Target:  5'- cGCGccGCCGCgaggCCgGCGUGCGCGg--- -3'
miRNA:   3'- -CGCa-CGGCGaa--GG-UGCGCGCGCagcg -5'
29394 5' -59.4 NC_006151.1 + 122666 0.66 0.767207
Target:  5'- cGCGagcGCCGCg-CCGaggUGCGCGCGgcggccguggagcUCGCg -3'
miRNA:   3'- -CGCa--CGGCGaaGGU---GCGCGCGC-------------AGCG- -5'
29394 5' -59.4 NC_006151.1 + 68216 0.66 0.765371
Target:  5'- aGCG-GCCcugcgccaggcgcaGCgcCCGCGgGCGCGUCa- -3'
miRNA:   3'- -CGCaCGG--------------CGaaGGUGCgCGCGCAGcg -5'
29394 5' -59.4 NC_006151.1 + 67025 0.66 0.758912
Target:  5'- -gGUGCUGCUcggggaCCACGCcgaGCGCGccacCGCc -3'
miRNA:   3'- cgCACGGCGAa-----GGUGCG---CGCGCa---GCG- -5'
29394 5' -59.4 NC_006151.1 + 52005 0.66 0.758912
Target:  5'- gGCGUGCaGCUugcgCCGCGCcagcuccucgGCGaaggccggcgcCGUCGCg -3'
miRNA:   3'- -CGCACGgCGAa---GGUGCG----------CGC-----------GCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 81848 0.66 0.758912
Target:  5'- ---aGgCGCgagagCAgGCGCGCGUCGCu -3'
miRNA:   3'- cgcaCgGCGaag--GUgCGCGCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 37023 0.66 0.758912
Target:  5'- ---cGCCGCcgCCGCGCG-GCGcUCGg -3'
miRNA:   3'- cgcaCGGCGaaGGUGCGCgCGC-AGCg -5'
29394 5' -59.4 NC_006151.1 + 49606 0.66 0.758912
Target:  5'- cGCGcUGCCGg-UCCugGCG-GUGcugCGCg -3'
miRNA:   3'- -CGC-ACGGCgaAGGugCGCgCGCa--GCG- -5'
29394 5' -59.4 NC_006151.1 + 54742 0.66 0.758912
Target:  5'- ---cGCCGaggCCAUGCGCGgCGUCa- -3'
miRNA:   3'- cgcaCGGCgaaGGUGCGCGC-GCAGcg -5'
29394 5' -59.4 NC_006151.1 + 58013 0.66 0.758912
Target:  5'- cGCG-GCCGCggCCACcuUGauCGUCGCa -3'
miRNA:   3'- -CGCaCGGCGaaGGUGc-GCgcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 127227 0.66 0.758912
Target:  5'- cGCGggGCCGUca-CACGCGCcagcucuuGCGgCGCg -3'
miRNA:   3'- -CGCa-CGGCGaagGUGCGCG--------CGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 101544 0.66 0.758912
Target:  5'- gGCGcGCCuGCgcCCggcggacguguACGCGCaCGUCGCg -3'
miRNA:   3'- -CGCaCGG-CGaaGG-----------UGCGCGcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 118354 0.66 0.758912
Target:  5'- cGCGcGCCuGCgaggCgGCGCGCGCc-CGCu -3'
miRNA:   3'- -CGCaCGG-CGaa--GgUGCGCGCGcaGCG- -5'
29394 5' -59.4 NC_006151.1 + 99300 0.66 0.756127
Target:  5'- aGCGcGCCGUgcuggaCCGCGCGCcccgccugacggacGCGcagCGCg -3'
miRNA:   3'- -CGCaCGGCGaa----GGUGCGCG--------------CGCa--GCG- -5'
29394 5' -59.4 NC_006151.1 + 78419 0.67 0.753334
Target:  5'- cGCGagcGCCGUggcCCACGCcgucaaccgcgugcuGCGCGagGCg -3'
miRNA:   3'- -CGCa--CGGCGaa-GGUGCG---------------CGCGCagCG- -5'
29394 5' -59.4 NC_006151.1 + 136815 0.67 0.749595
Target:  5'- cGCG-GCCGaCgcgCCGCGCGgGCucUGCg -3'
miRNA:   3'- -CGCaCGGC-Gaa-GGUGCGCgCGcaGCG- -5'
29394 5' -59.4 NC_006151.1 + 92671 0.67 0.749595
Target:  5'- uGC-UGCCgGCggCCggggACGCGCGC-UCGCc -3'
miRNA:   3'- -CGcACGG-CGaaGG----UGCGCGCGcAGCG- -5'
29394 5' -59.4 NC_006151.1 + 68739 0.67 0.749595
Target:  5'- aGCGgGCCGCUcucgaaggUCACGUagccggcggugGCGCG-CGCg -3'
miRNA:   3'- -CGCaCGGCGAa-------GGUGCG-----------CGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 111939 0.67 0.749595
Target:  5'- aGgGUGCCGCUcauggUCguCGU-CGuCGUCGCg -3'
miRNA:   3'- -CgCACGGCGA-----AGguGCGcGC-GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.