miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 83094 0.66 0.786194
Target:  5'- cGCGUGCaccucgaGCgggcgcCCGCGC-CG-GUCGCa -3'
miRNA:   3'- -CGCACGg------CGaa----GGUGCGcGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 106351 0.66 0.786194
Target:  5'- cGCGgugGacaCGCUggaCGCGgGCGCG-CGCc -3'
miRNA:   3'- -CGCa--Cg--GCGAag-GUGCgCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 63668 0.66 0.785303
Target:  5'- cCGgGUCGCUaaauagccagaccUCCgacuggGCGUGCGCGuUCGCg -3'
miRNA:   3'- cGCaCGGCGA-------------AGG------UGCGCGCGC-AGCG- -5'
29394 5' -59.4 NC_006151.1 + 27135 0.66 0.780825
Target:  5'- gGCGaUGCCGCgaaagaggcggUUCACGUcggccccgaggcgccGCGUGUCGg -3'
miRNA:   3'- -CGC-ACGGCGa----------AGGUGCG---------------CGCGCAGCg -5'
29394 5' -59.4 NC_006151.1 + 100644 0.66 0.780825
Target:  5'- cGCGcugcGCCGCgccgUCgacgagcgcggcgugCugGCGCuCGUCGCg -3'
miRNA:   3'- -CGCa---CGGCGa---AG---------------GugCGCGcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 124098 0.66 0.77722
Target:  5'- aGCGgGaCCGCUUCUACGUcuGCcCGcCGCc -3'
miRNA:   3'- -CGCaC-GGCGAAGGUGCG--CGcGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 54815 0.66 0.77722
Target:  5'- cGCGUGCUgGCgcgCgACGCGCucacggGCGagCGCg -3'
miRNA:   3'- -CGCACGG-CGaa-GgUGCGCG------CGCa-GCG- -5'
29394 5' -59.4 NC_006151.1 + 79083 0.66 0.77722
Target:  5'- ----aCCGCccCCGCGCGCGCGagcgagCGCc -3'
miRNA:   3'- cgcacGGCGaaGGUGCGCGCGCa-----GCG- -5'
29394 5' -59.4 NC_006151.1 + 119300 0.66 0.77722
Target:  5'- cGCGUGCUGCUgcaCACG-GC-C-UCGCa -3'
miRNA:   3'- -CGCACGGCGAag-GUGCgCGcGcAGCG- -5'
29394 5' -59.4 NC_006151.1 + 121265 0.66 0.77722
Target:  5'- gGCG-GCCGCgcuggcggagaUCaACGgGCGCGUgGCc -3'
miRNA:   3'- -CGCaCGGCGa----------AGgUGCgCGCGCAgCG- -5'
29394 5' -59.4 NC_006151.1 + 115937 0.66 0.77722
Target:  5'- cGCGcagGCCcg--CCGgGCGCGCGagCGCg -3'
miRNA:   3'- -CGCa--CGGcgaaGGUgCGCGCGCa-GCG- -5'
29394 5' -59.4 NC_006151.1 + 138005 0.66 0.77722
Target:  5'- gGCGcacGCCGU---CACGCGCGUGcUGCa -3'
miRNA:   3'- -CGCa--CGGCGaagGUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 17062 0.66 0.776315
Target:  5'- gGCGUccgucagcccggGCCGCcgCCgggucagGCGCGCGCccGUCGg -3'
miRNA:   3'- -CGCA------------CGGCGaaGG-------UGCGCGCG--CAGCg -5'
29394 5' -59.4 NC_006151.1 + 86634 0.66 0.774503
Target:  5'- cGCGUGUgGCacaUgagcgaggaggcgcUCACGCGCGCGcUGCu -3'
miRNA:   3'- -CGCACGgCGa--A--------------GGUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 71953 0.66 0.768123
Target:  5'- cGCGUgGCCGCcUCgGCGuUGuCGCGgUGCg -3'
miRNA:   3'- -CGCA-CGGCGaAGgUGC-GC-GCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 84020 0.66 0.768123
Target:  5'- gGUGcGCCGCcccgaCUGCGUGUGCGUgGUg -3'
miRNA:   3'- -CGCaCGGCGaa---GGUGCGCGCGCAgCG- -5'
29394 5' -59.4 NC_006151.1 + 104163 0.66 0.768123
Target:  5'- cGCGgaGCUGCgccccgCCGCcgaGCGCGCGcUCGg -3'
miRNA:   3'- -CGCa-CGGCGaa----GGUG---CGCGCGC-AGCg -5'
29394 5' -59.4 NC_006151.1 + 113286 0.66 0.768123
Target:  5'- ---cGCCGCggCgUACGCGCGCuaccgCGCg -3'
miRNA:   3'- cgcaCGGCGaaG-GUGCGCGCGca---GCG- -5'
29394 5' -59.4 NC_006151.1 + 138199 0.66 0.768123
Target:  5'- cCGUGCUGCggcaccUCgACGCGCacuucaacggGCG-CGCg -3'
miRNA:   3'- cGCACGGCGa-----AGgUGCGCG----------CGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 39001 0.66 0.768123
Target:  5'- cGCGcGCCGCggcgccccgcUCCGC-CGCcGCGcCGCc -3'
miRNA:   3'- -CGCaCGGCGa---------AGGUGcGCG-CGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.