miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 111135 0.76 0.256875
Target:  5'- cUGUGCgCGCccCCGCGCGCGCGgcCGCc -3'
miRNA:   3'- cGCACG-GCGaaGGUGCGCGCGCa-GCG- -5'
29394 5' -59.4 NC_006151.1 + 58424 0.76 0.262892
Target:  5'- gGCGUGCgGCagCCACGCcucgguggcguGCGCG-CGCg -3'
miRNA:   3'- -CGCACGgCGaaGGUGCG-----------CGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 100892 0.76 0.262892
Target:  5'- -gGUGCUGCgccgCgGCGCGCGCG-CGCc -3'
miRNA:   3'- cgCACGGCGaa--GgUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 102391 0.76 0.275269
Target:  5'- aGC-UGgCGCUggUCGCgGCGCGCGUCGCg -3'
miRNA:   3'- -CGcACgGCGAa-GGUG-CGCGCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 127987 0.76 0.275269
Target:  5'- uCGUGCgGCggcUCCGCGuCGCG-GUCGCg -3'
miRNA:   3'- cGCACGgCGa--AGGUGC-GCGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 62050 0.75 0.288108
Target:  5'- cGCGUGgCGgUgcaCGCGCGCGCcGUCGUg -3'
miRNA:   3'- -CGCACgGCgAag-GUGCGCGCG-CAGCG- -5'
29394 5' -59.4 NC_006151.1 + 113523 0.75 0.294701
Target:  5'- gGCGgacGCgCGCUUCCugGCGCugaugcGCGcCGCg -3'
miRNA:   3'- -CGCa--CG-GCGAAGGugCGCG------CGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 64002 0.75 0.301412
Target:  5'- uGCGUGCgGUgcggcgCCAgGCGCccgaucGCGUCGCg -3'
miRNA:   3'- -CGCACGgCGaa----GGUgCGCG------CGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 67279 0.75 0.30824
Target:  5'- cGCGccugcGCCGCUggugCCGCGaCGCGCG-CGUg -3'
miRNA:   3'- -CGCa----CGGCGAa---GGUGC-GCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 50001 0.75 0.30824
Target:  5'- cGCGU-UUGCgcgCCGCGCGCGCGgcccgCGCg -3'
miRNA:   3'- -CGCAcGGCGaa-GGUGCGCGCGCa----GCG- -5'
29394 5' -59.4 NC_006151.1 + 114115 0.74 0.322249
Target:  5'- gGCG-GCUGCUgccCCACGUGCGcCGcCGCc -3'
miRNA:   3'- -CGCaCGGCGAa--GGUGCGCGC-GCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 75873 0.74 0.322249
Target:  5'- uGCGUGuCCGCgugggUCAUGCGCGCGaCGg -3'
miRNA:   3'- -CGCAC-GGCGaa---GGUGCGCGCGCaGCg -5'
29394 5' -59.4 NC_006151.1 + 20158 0.74 0.32943
Target:  5'- cGCGUGgaCCGCcgggCCGCGCcCGgGUCGCg -3'
miRNA:   3'- -CGCAC--GGCGaa--GGUGCGcGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 123219 0.74 0.32943
Target:  5'- gGCGgugGCCGCcgggUUCCGCgcacgGCGCGCGUucUGCg -3'
miRNA:   3'- -CGCa--CGGCG----AAGGUG-----CGCGCGCA--GCG- -5'
29394 5' -59.4 NC_006151.1 + 66071 0.74 0.336728
Target:  5'- cGCGgacgGCCGCcugggcUUCCACGCgggccugcaGCGCG-CGCg -3'
miRNA:   3'- -CGCa---CGGCG------AAGGUGCG---------CGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 26359 0.74 0.336728
Target:  5'- gGCGgGCCGCgUCgGgGCGCGCGUCc- -3'
miRNA:   3'- -CGCaCGGCGaAGgUgCGCGCGCAGcg -5'
29394 5' -59.4 NC_006151.1 + 66530 0.74 0.336728
Target:  5'- cGCGcGCCGCgcUCUucggggGCGCGCGCGgccgCGCc -3'
miRNA:   3'- -CGCaCGGCGa-AGG------UGCGCGCGCa---GCG- -5'
29394 5' -59.4 NC_006151.1 + 86060 0.74 0.33968
Target:  5'- ---cGCCGCcugagcccgcagucUCCGCGCGCGCGcCGCc -3'
miRNA:   3'- cgcaCGGCGa-------------AGGUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 85345 0.74 0.344143
Target:  5'- aGCGUGCuCGCcgCgCugGCGCGCcugCGCg -3'
miRNA:   3'- -CGCACG-GCGaaG-GugCGCGCGca-GCG- -5'
29394 5' -59.4 NC_006151.1 + 88728 0.74 0.344143
Target:  5'- gGCGUccGCCGCggCCACGCGCaCGgacaccUCGCc -3'
miRNA:   3'- -CGCA--CGGCGaaGGUGCGCGcGC------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.