miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 121999 1.14 0.000718
Target:  5'- cGCGUGCCGCUUCCACGCGCGCGUCGCg -3'
miRNA:   3'- -CGCACGGCGAAGGUGCGCGCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 96368 0.84 0.075973
Target:  5'- aGCGgaggGCCGCcUCCACGCGCGCGcggUGCc -3'
miRNA:   3'- -CGCa---CGGCGaAGGUGCGCGCGCa--GCG- -5'
29394 5' -59.4 NC_006151.1 + 71034 0.82 0.100896
Target:  5'- cGCGgaGCUGCgcgCCGCGCGCGuCGUCGCc -3'
miRNA:   3'- -CGCa-CGGCGaa-GGUGCGCGC-GCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 119059 0.81 0.133384
Target:  5'- cGCG-GCCGCcUCCGCGgGCGCGcccgucUCGCa -3'
miRNA:   3'- -CGCaCGGCGaAGGUGCgCGCGC------AGCG- -5'
29394 5' -59.4 NC_006151.1 + 85297 0.8 0.154943
Target:  5'- cGCGUGCCGCgcgagcagcUCCACGgGCGCuacgCGCu -3'
miRNA:   3'- -CGCACGGCGa--------AGGUGCgCGCGca--GCG- -5'
29394 5' -59.4 NC_006151.1 + 115200 0.79 0.166868
Target:  5'- aGCGcGCCGCgggCGCGCGCGCGaUCGUg -3'
miRNA:   3'- -CGCaCGGCGaagGUGCGCGCGC-AGCG- -5'
29394 5' -59.4 NC_006151.1 + 64440 0.79 0.170603
Target:  5'- cGCGUgGCCGCcUCCACcgucaggauggcgGCGCGCGcCGCc -3'
miRNA:   3'- -CGCA-CGGCGaAGGUG-------------CGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 128620 0.78 0.207697
Target:  5'- gGCGUGCgCcccaggugGCggaCCACGCGCGCGUCGa -3'
miRNA:   3'- -CGCACG-G--------CGaa-GGUGCGCGCGCAGCg -5'
29394 5' -59.4 NC_006151.1 + 117275 0.77 0.212732
Target:  5'- cGCG-GCCGCcgCCGacaGCGCGCG-CGCg -3'
miRNA:   3'- -CGCaCGGCGaaGGUg--CGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 130497 0.77 0.22847
Target:  5'- cGCGgcgccacacGCCGCgcgUCUcggGCGCGgGCGUCGCg -3'
miRNA:   3'- -CGCa--------CGGCGa--AGG---UGCGCgCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 105578 0.77 0.22847
Target:  5'- gGCG-GCCGcCUUCgACGCGCGCGcggaGCg -3'
miRNA:   3'- -CGCaCGGC-GAAGgUGCGCGCGCag--CG- -5'
29394 5' -59.4 NC_006151.1 + 85770 0.77 0.23228
Target:  5'- cGCGcUGgCGCUggacgcgcacucgaUCCGCGCGCGCGU-GCa -3'
miRNA:   3'- -CGC-ACgGCGA--------------AGGUGCGCGCGCAgCG- -5'
29394 5' -59.4 NC_006151.1 + 138714 0.77 0.23393
Target:  5'- ---cGCUGCgcgCCGCGCGCGgGUCGUg -3'
miRNA:   3'- cgcaCGGCGaa-GGUGCGCGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 119377 0.77 0.2395
Target:  5'- gGCGUGCgGCUUCugcccgcagcugCugGCGCGCGU-GCu -3'
miRNA:   3'- -CGCACGgCGAAG------------GugCGCGCGCAgCG- -5'
29394 5' -59.4 NC_006151.1 + 50074 0.77 0.2395
Target:  5'- cUGUGCCGCagagcCCACgcgGCGCGCGUaCGCg -3'
miRNA:   3'- cGCACGGCGaa---GGUG---CGCGCGCA-GCG- -5'
29394 5' -59.4 NC_006151.1 + 121883 0.77 0.2395
Target:  5'- aCGUGCgCGCUgcgCCugGCGCucGCGUaCGCg -3'
miRNA:   3'- cGCACG-GCGAa--GGugCGCG--CGCA-GCG- -5'
29394 5' -59.4 NC_006151.1 + 134565 0.76 0.24518
Target:  5'- cCGUGCCGCUUCCGgauccagaacCGCG-GCG-CGCa -3'
miRNA:   3'- cGCACGGCGAAGGU----------GCGCgCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 58729 0.76 0.250971
Target:  5'- cCGUGCCGCUcgCguCGCGCaGCGcCGCg -3'
miRNA:   3'- cGCACGGCGAa-GguGCGCG-CGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 59875 0.76 0.255092
Target:  5'- aGCa--CCGCUggcuggcgaaggcgUCCAgGCGCGCGUCGCg -3'
miRNA:   3'- -CGcacGGCGA--------------AGGUgCGCGCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 69748 0.76 0.255685
Target:  5'- cGCG-GCCGCgaccgccggggCCACGCGCcGCG-CGCg -3'
miRNA:   3'- -CGCaCGGCGaa---------GGUGCGCG-CGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.