miRNA display CGI


Results 1 - 20 of 312 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 479 0.67 0.70172
Target:  5'- uGCGUaugaCGCUUCC-CGCGCGCaacuucCGCc -3'
miRNA:   3'- -CGCAcg--GCGAAGGuGCGCGCGca----GCG- -5'
29394 5' -59.4 NC_006151.1 + 3231 0.68 0.672265
Target:  5'- --cUGCCGCaUCCAgGCGgCGCGgcgGCg -3'
miRNA:   3'- cgcACGGCGaAGGUgCGC-GCGCag-CG- -5'
29394 5' -59.4 NC_006151.1 + 4121 0.66 0.791517
Target:  5'- cGCGgccugccGCCGCUcggCCGgGCcggccccggggauCGCGUCGCg -3'
miRNA:   3'- -CGCa------CGGCGAa--GGUgCGc------------GCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 4807 0.73 0.407601
Target:  5'- aGCGgGCCGCggCCugGCG-GaCGUCGUc -3'
miRNA:   3'- -CGCaCGGCGaaGGugCGCgC-GCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 7635 0.68 0.662373
Target:  5'- cGCG-GUCGCc-CCACcCGCGCcUCGCg -3'
miRNA:   3'- -CGCaCGGCGaaGGUGcGCGCGcAGCG- -5'
29394 5' -59.4 NC_006151.1 + 8298 0.68 0.63955
Target:  5'- cGCGggcGCCGCgucCCGCcccgagcccccgggGCGCGCGggccucgaUCGCg -3'
miRNA:   3'- -CGCa--CGGCGaa-GGUG--------------CGCGCGC--------AGCG- -5'
29394 5' -59.4 NC_006151.1 + 8828 0.7 0.534315
Target:  5'- uGUGUGCgCGCgccucUCCcCGUGCGUGucUCGCu -3'
miRNA:   3'- -CGCACG-GCGa----AGGuGCGCGCGC--AGCG- -5'
29394 5' -59.4 NC_006151.1 + 8953 0.7 0.534315
Target:  5'- -gGUcCCGgUcCCACGCGCGCG-CGCc -3'
miRNA:   3'- cgCAcGGCgAaGGUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 11346 0.7 0.55366
Target:  5'- cGCGgGCCGC--CCGCGgGCGCuaccgCGCg -3'
miRNA:   3'- -CGCaCGGCGaaGGUGCgCGCGca---GCG- -5'
29394 5' -59.4 NC_006151.1 + 11692 0.71 0.496397
Target:  5'- aCGggGCCGCgggaCgGCGCGUGCGgCGCg -3'
miRNA:   3'- cGCa-CGGCGaa--GgUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 15037 0.68 0.662373
Target:  5'- -gGUG-CGCgUCCACgGCGCGCGggGCc -3'
miRNA:   3'- cgCACgGCGaAGGUG-CGCGCGCagCG- -5'
29394 5' -59.4 NC_006151.1 + 16894 0.68 0.64253
Target:  5'- cGCGUccguuGCCGCgcCCGCcccggcgccgGCGCaCGUCGCc -3'
miRNA:   3'- -CGCA-----CGGCGaaGGUG----------CGCGcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 17062 0.66 0.776315
Target:  5'- gGCGUccgucagcccggGCCGCcgCCgggucagGCGCGCGCccGUCGg -3'
miRNA:   3'- -CGCA------------CGGCGaaGG-------UGCGCGCG--CAGCg -5'
29394 5' -59.4 NC_006151.1 + 17466 0.67 0.711439
Target:  5'- cGUGuUGCCGCggcgugUCCuCGUcggcgGCGCGcCGCu -3'
miRNA:   3'- -CGC-ACGGCGa-----AGGuGCG-----CGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 18666 0.71 0.505769
Target:  5'- gGCGUcguccgGCCGUacgggUUCCACggGCGCGCGggcggCGCc -3'
miRNA:   3'- -CGCA------CGGCG-----AAGGUG--CGCGCGCa----GCG- -5'
29394 5' -59.4 NC_006151.1 + 18715 0.7 0.573208
Target:  5'- uCGUGaCGCcgUCCACGUagaucGCGuCGUCGCc -3'
miRNA:   3'- cGCACgGCGa-AGGUGCG-----CGC-GCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 18999 0.72 0.424573
Target:  5'- cGCG-GCgCGCcaccagCCGCGCGCGCGcCGg -3'
miRNA:   3'- -CGCaCG-GCGaa----GGUGCGCGCGCaGCg -5'
29394 5' -59.4 NC_006151.1 + 19154 0.66 0.786194
Target:  5'- aGCGUgGCgGUgaagUUCuCGCGCGaGUCGCc -3'
miRNA:   3'- -CGCA-CGgCGa---AGGuGCGCGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 20158 0.74 0.32943
Target:  5'- cGCGUGgaCCGCcgggCCGCGCcCGgGUCGCg -3'
miRNA:   3'- -CGCAC--GGCGaa--GGUGCGcGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 20539 0.66 0.786194
Target:  5'- gGCGUccucgGCgGggUCCACGaCGCGCaggcuGUCGUg -3'
miRNA:   3'- -CGCA-----CGgCgaAGGUGC-GCGCG-----CAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.