miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 142309 0.67 0.711439
Target:  5'- aGCGagcGCCGUaugggggCC-CGCGCGC-UCGCg -3'
miRNA:   3'- -CGCa--CGGCGaa-----GGuGCGCGCGcAGCG- -5'
29394 5' -59.4 NC_006151.1 + 141742 0.66 0.79416
Target:  5'- gGCGgaggGgCGCggggCGCGCGCcccggugGCGUCGCc -3'
miRNA:   3'- -CGCa---CgGCGaag-GUGCGCG-------CGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 141630 0.66 0.795038
Target:  5'- gGCGgGUCGCUgCCGCGgCGgCGCGgcggggcccCGCg -3'
miRNA:   3'- -CGCaCGGCGAaGGUGC-GC-GCGCa--------GCG- -5'
29394 5' -59.4 NC_006151.1 + 140048 0.72 0.415186
Target:  5'- uGCG-GCCGCacgCCACcgaggcgGCGCGCGUgcucCGCg -3'
miRNA:   3'- -CGCaCGGCGaa-GGUG-------CGCGCGCA----GCG- -5'
29394 5' -59.4 NC_006151.1 + 139898 0.7 0.54396
Target:  5'- cCGUGUUcaacgacgGCUUCCGCGcCGCGggcuCGUCGCc -3'
miRNA:   3'- cGCACGG--------CGAAGGUGC-GCGC----GCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 139808 0.72 0.416034
Target:  5'- cGCGcGCCGCcgUCuccgcgacgCACGCGCGgGUCGg -3'
miRNA:   3'- -CGCaCGGCGa-AG---------GUGCGCGCgCAGCg -5'
29394 5' -59.4 NC_006151.1 + 139311 0.69 0.622656
Target:  5'- cGCGUGCUGC-UCgAC-CGUGC-UCGCc -3'
miRNA:   3'- -CGCACGGCGaAGgUGcGCGCGcAGCG- -5'
29394 5' -59.4 NC_006151.1 + 139221 0.7 0.534315
Target:  5'- gGCGacgcUGCCGCa--CAuCGCGCGCGUCu- -3'
miRNA:   3'- -CGC----ACGGCGaagGU-GCGCGCGCAGcg -5'
29394 5' -59.4 NC_006151.1 + 138714 0.77 0.23393
Target:  5'- ---cGCUGCgcgCCGCGCGCGgGUCGUg -3'
miRNA:   3'- cgcaCGGCGaa-GGUGCGCGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 138199 0.66 0.768123
Target:  5'- cCGUGCUGCggcaccUCgACGCGCacuucaacggGCG-CGCg -3'
miRNA:   3'- cGCACGGCGa-----AGgUGCGCG----------CGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 138005 0.66 0.77722
Target:  5'- gGCGcacGCCGU---CACGCGCGUGcUGCa -3'
miRNA:   3'- -CGCa--CGGCGaagGUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 137759 0.71 0.487105
Target:  5'- -gGU-CCGCggCCugGCGCGCGU-GCu -3'
miRNA:   3'- cgCAcGGCGaaGGugCGCGCGCAgCG- -5'
29394 5' -59.4 NC_006151.1 + 137683 0.72 0.450802
Target:  5'- uGCGgcUGCCGCgccaagaugggcUUCCGCGUGUGCacgcccugccGUCGCc -3'
miRNA:   3'- -CGC--ACGGCG------------AAGGUGCGCGCG----------CAGCG- -5'
29394 5' -59.4 NC_006151.1 + 137280 0.67 0.70172
Target:  5'- cGCGgGCaCGCUcgaggcggCCAUGCGCGgGUucCGCc -3'
miRNA:   3'- -CGCaCG-GCGAa-------GGUGCGCGCgCA--GCG- -5'
29394 5' -59.4 NC_006151.1 + 136983 0.67 0.740181
Target:  5'- ---cGCCGCgccgggCgGCGgGCGCG-CGCg -3'
miRNA:   3'- cgcaCGGCGaa----GgUGCgCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 136845 0.7 0.524732
Target:  5'- cGCG-GCCGCcggCCuCGCGCGC--CGCg -3'
miRNA:   3'- -CGCaCGGCGaa-GGuGCGCGCGcaGCG- -5'
29394 5' -59.4 NC_006151.1 + 136815 0.67 0.749595
Target:  5'- cGCG-GCCGaCgcgCCGCGCGgGCucUGCg -3'
miRNA:   3'- -CGCaCGGC-Gaa-GGUGCGCgCGcaGCG- -5'
29394 5' -59.4 NC_006151.1 + 136675 0.71 0.468774
Target:  5'- cGCGgccGCCGCcuucuuccgCCACGUGCGgG-CGCa -3'
miRNA:   3'- -CGCa--CGGCGaa-------GGUGCGCGCgCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 136435 0.7 0.55366
Target:  5'- gGCGcacGCCGCgcgCUACGUcgacgaGCGCGUgCGCg -3'
miRNA:   3'- -CGCa--CGGCGaa-GGUGCG------CGCGCA-GCG- -5'
29394 5' -59.4 NC_006151.1 + 135870 0.7 0.54396
Target:  5'- aCGUgGCCaGCgUCCGCGUGCGgcccguguuCGUCGCc -3'
miRNA:   3'- cGCA-CGG-CGaAGGUGCGCGC---------GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.