miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 21769 0.68 0.64253
Target:  5'- aCGUGCgGUgcuggUCCACGCGgGCGaacggGCa -3'
miRNA:   3'- cGCACGgCGa----AGGUGCGCgCGCag---CG- -5'
29394 5' -59.4 NC_006151.1 + 24205 0.7 0.55366
Target:  5'- ---aGCCcgagGCgagCCACGCGCGCGUacUGCg -3'
miRNA:   3'- cgcaCGG----CGaa-GGUGCGCGCGCA--GCG- -5'
29394 5' -59.4 NC_006151.1 + 24967 0.67 0.721094
Target:  5'- uGCGcGCCGCggCC-UGC-CGCGUCaGCc -3'
miRNA:   3'- -CGCaCGGCGaaGGuGCGcGCGCAG-CG- -5'
29394 5' -59.4 NC_006151.1 + 25415 0.72 0.433215
Target:  5'- gGCGccGCCGCc-CCACGCGCGCccGUCa- -3'
miRNA:   3'- -CGCa-CGGCGaaGGUGCGCGCG--CAGcg -5'
29394 5' -59.4 NC_006151.1 + 26359 0.74 0.336728
Target:  5'- gGCGgGCCGCgUCgGgGCGCGCGUCc- -3'
miRNA:   3'- -CGCaCGGCGaAGgUgCGCGCGCAGcg -5'
29394 5' -59.4 NC_006151.1 + 27087 0.69 0.602809
Target:  5'- gGCGcGgCGCagg-GCGCGCGUGUCGCc -3'
miRNA:   3'- -CGCaCgGCGaaggUGCGCGCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 27135 0.66 0.780825
Target:  5'- gGCGaUGCCGCgaaagaggcggUUCACGUcggccccgaggcgccGCGUGUCGg -3'
miRNA:   3'- -CGC-ACGGCGa----------AGGUGCG---------------CGCGCAGCg -5'
29394 5' -59.4 NC_006151.1 + 31620 0.68 0.680155
Target:  5'- gGCGgggaUGCCGCgccggcacgagCgCACGCGgGCG-CGCg -3'
miRNA:   3'- -CGC----ACGGCGaa---------G-GUGCGCgCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 33126 0.7 0.524732
Target:  5'- cGCGUGCCGCgggCCgagugucggGCGaGUGCGagGCg -3'
miRNA:   3'- -CGCACGGCGaa-GG---------UGCgCGCGCagCG- -5'
29394 5' -59.4 NC_006151.1 + 35090 0.69 0.612726
Target:  5'- cGCGUGCCGagcaugcgCCuCGCGCcCG-CGCg -3'
miRNA:   3'- -CGCACGGCgaa-----GGuGCGCGcGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 37023 0.66 0.758912
Target:  5'- ---cGCCGCcgCCGCGCG-GCGcUCGg -3'
miRNA:   3'- cgcaCGGCGaaGGUGCGCgCGC-AGCg -5'
29394 5' -59.4 NC_006151.1 + 39001 0.66 0.768123
Target:  5'- cGCGcGCCGCggcgccccgcUCCGC-CGCcGCGcCGCc -3'
miRNA:   3'- -CGCaCGGCGa---------AGGUGcGCG-CGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 39481 0.7 0.573208
Target:  5'- cGgGUGCCGCgagcUCCGCGCG-GCcgUGCu -3'
miRNA:   3'- -CgCACGGCGa---AGGUGCGCgCGcaGCG- -5'
29394 5' -59.4 NC_006151.1 + 39954 0.67 0.730678
Target:  5'- -gGUGCUGaccCCGgGCGC-CGUCGCc -3'
miRNA:   3'- cgCACGGCgaaGGUgCGCGcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 41493 0.67 0.730678
Target:  5'- cGCGUGgCGCgaggggagCCAaugggGCGgGCGcCGCg -3'
miRNA:   3'- -CGCACgGCGaa------GGUg----CGCgCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 43082 0.7 0.55366
Target:  5'- cGCGUGuCCGCUcccCCcCGUGuCGCG-CGCu -3'
miRNA:   3'- -CGCAC-GGCGAa--GGuGCGC-GCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 45183 0.7 0.557555
Target:  5'- gGCGUGcCCGCcaCCACggacggcgacgggguGCGcCGCGcUCGCg -3'
miRNA:   3'- -CGCAC-GGCGaaGGUG---------------CGC-GCGC-AGCG- -5'
29394 5' -59.4 NC_006151.1 + 45419 0.72 0.433215
Target:  5'- gGUGUGuuGUgggCCGgggguuCGCGgGCGUCGCa -3'
miRNA:   3'- -CGCACggCGaa-GGU------GCGCgCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 47259 0.69 0.612726
Target:  5'- gGCGagaugGaCCGCUcCgGCGCGCaGCGUcCGCg -3'
miRNA:   3'- -CGCa----C-GGCGAaGgUGCGCG-CGCA-GCG- -5'
29394 5' -59.4 NC_006151.1 + 48916 0.68 0.690966
Target:  5'- cGCG-GCCGCUgccugaCCGaggaggugcugccCGCGCGCGaggacguguUCGCc -3'
miRNA:   3'- -CGCaCGGCGAa-----GGU-------------GCGCGCGC---------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.