miRNA display CGI


Results 61 - 80 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 21856 0.67 0.966251
Target:  5'- ---cGACGGACAC-CAgGCGcCGguacuggCCCu -3'
miRNA:   3'- caaaCUGUCUGUGuGUgCGC-GCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 101558 0.67 0.966251
Target:  5'- ---cGGCGGACGugUACGCGCaCGUCgCg -3'
miRNA:   3'- caaaCUGUCUGU--GUGUGCGcGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 57088 0.67 0.964255
Target:  5'- ----cGCAGGCGCACgcagcgccgcgagcaGCGCGCGcCgCCg -3'
miRNA:   3'- caaacUGUCUGUGUG---------------UGCGCGCaG-GG- -5'
29395 5' -52.3 NC_006151.1 + 28255 0.67 0.962879
Target:  5'- -aUUGGCcgGGGCcuCACACGUGgGcCCCg -3'
miRNA:   3'- caAACUG--UCUGu-GUGUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 33928 0.67 0.962879
Target:  5'- ---gGGCGGAUcgAgGCcCGCGCGcCCCg -3'
miRNA:   3'- caaaCUGUCUG--UgUGuGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 116124 0.67 0.962879
Target:  5'- -cUUGuCGGGCAgCACGaagcCGCGCGagCCCg -3'
miRNA:   3'- caAACuGUCUGU-GUGU----GCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 130305 0.67 0.962879
Target:  5'- ---cGACGG-CGCggaGCGCGCGCG-CCg -3'
miRNA:   3'- caaaCUGUCuGUG---UGUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 73252 0.67 0.95928
Target:  5'- ---aGACGGGCACGgGCGCcagGCGguugCCg -3'
miRNA:   3'- caaaCUGUCUGUGUgUGCG---CGCa---GGg -5'
29395 5' -52.3 NC_006151.1 + 132841 0.67 0.95928
Target:  5'- ---gGACGGcCAC-CACGgGCGgccggCCCg -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCgCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 20769 0.67 0.95928
Target:  5'- ---cGGCGGACGCGCGcCGgGCGagcggCUCg -3'
miRNA:   3'- caaaCUGUCUGUGUGU-GCgCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 52175 0.67 0.95928
Target:  5'- ---cGAaGGGCGCGCGCGCgaacGCGgCCCc -3'
miRNA:   3'- caaaCUgUCUGUGUGUGCG----CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 68294 0.67 0.95928
Target:  5'- ---cGGCGG-C-CAgGCGCGCG-CCCa -3'
miRNA:   3'- caaaCUGUCuGuGUgUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 93673 0.67 0.95928
Target:  5'- ---aGGCuGuCGCGCgggGCGCGCG-CCCg -3'
miRNA:   3'- caaaCUGuCuGUGUG---UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 111348 0.67 0.95928
Target:  5'- gGUcgGGCGGAUGgGCGCGCGgGgcgagggCCCc -3'
miRNA:   3'- -CAaaCUGUCUGUgUGUGCGCgCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 53332 0.67 0.95928
Target:  5'- ----cACAGACgagcacgggGCGCGCGCGCG-CCg -3'
miRNA:   3'- caaacUGUCUG---------UGUGUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 88770 0.67 0.95928
Target:  5'- -gUUGGC-GACGguCGCGCGCucgCCCu -3'
miRNA:   3'- caAACUGuCUGUguGUGCGCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 21488 0.67 0.958907
Target:  5'- ---gGGCAGGCggccgggGgGCGCGgGCGUCaCCg -3'
miRNA:   3'- caaaCUGUCUG-------UgUGUGCgCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 59678 0.68 0.955842
Target:  5'- ---gGACGcGCGCGCACGCGCcgagcacggccaggCCCa -3'
miRNA:   3'- caaaCUGUcUGUGUGUGCGCGca------------GGG- -5'
29395 5' -52.3 NC_006151.1 + 59886 0.68 0.955448
Target:  5'- --cUGGCgaAGGCGucCAgGCGCGCGUCgCg -3'
miRNA:   3'- caaACUG--UCUGU--GUgUGCGCGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 98713 0.68 0.955448
Target:  5'- ---aGACGG-CGCGCGCGCuCGUgcagcCCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGUGCGcGCA-----GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.