miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 85358 0.66 0.97506
Target:  5'- ----cGCuGGCGCGCcuGCGCGUgGUCCCc -3'
miRNA:   3'- caaacUGuCUGUGUG--UGCGCG-CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 68837 0.66 0.97506
Target:  5'- ---cGGCgugugcucgAGGCGcCGCGCGaCGCGUCCa -3'
miRNA:   3'- caaaCUG---------UCUGU-GUGUGC-GCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 76697 0.67 0.972335
Target:  5'- ---gGAgAGugGCGCGgGCGCG-CCg -3'
miRNA:   3'- caaaCUgUCugUGUGUgCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 83369 0.67 0.972335
Target:  5'- ----cGCGGGCGCGCAgGCGCcgcaggugcucGUCCg -3'
miRNA:   3'- caaacUGUCUGUGUGUgCGCG-----------CAGGg -5'
29395 5' -52.3 NC_006151.1 + 97313 0.67 0.972335
Target:  5'- cGUcgGGCAGcGCGCGCuGCGCGgGUCg- -3'
miRNA:   3'- -CAaaCUGUC-UGUGUG-UGCGCgCAGgg -5'
29395 5' -52.3 NC_006151.1 + 58986 0.67 0.972335
Target:  5'- ----cGCGGGCACGagcgagaGCGCGgCGUCCa -3'
miRNA:   3'- caaacUGUCUGUGUg------UGCGC-GCAGGg -5'
29395 5' -52.3 NC_006151.1 + 72036 0.67 0.972335
Target:  5'- ----cGCGGGCGCcccgcCGCGCaGCGUCUCg -3'
miRNA:   3'- caaacUGUCUGUGu----GUGCG-CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 81370 0.67 0.972335
Target:  5'- ---cGGCGGGCGCcaGCGCGagccgcgcCGCGgcgCCCa -3'
miRNA:   3'- caaaCUGUCUGUG--UGUGC--------GCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 63324 0.67 0.971477
Target:  5'- ----cGCGGugACGCgaaaggccuccucgGCGCGCG-CCCg -3'
miRNA:   3'- caaacUGUCugUGUG--------------UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 31320 0.67 0.971477
Target:  5'- ----cACGGACACGCGCGCccacccucggcgccGUGggCCCg -3'
miRNA:   3'- caaacUGUCUGUGUGUGCG--------------CGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 19506 0.67 0.969401
Target:  5'- ---gGGCcucGGGgACGCAgGCGCGgCCCa -3'
miRNA:   3'- caaaCUG---UCUgUGUGUgCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 69619 0.67 0.969401
Target:  5'- ---cGACAGGaucuCGCGguCG-GCGUCCCg -3'
miRNA:   3'- caaaCUGUCU----GUGUguGCgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 75771 0.67 0.969401
Target:  5'- ----cACGGGCACGucCGCGUGCGUgUCCg -3'
miRNA:   3'- caaacUGUCUGUGU--GUGCGCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 10938 0.67 0.969401
Target:  5'- ---cGAgGGugG-GCGCGCGUGUCCg -3'
miRNA:   3'- caaaCUgUCugUgUGUGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 15893 0.67 0.969401
Target:  5'- ---cGGgGGACGCGCGCcccgaCGCGgCCCg -3'
miRNA:   3'- caaaCUgUCUGUGUGUGc----GCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 111118 0.67 0.969401
Target:  5'- ---cGGCGGggaGCGCGCGucugUGCGCGcCCCc -3'
miRNA:   3'- caaaCUGUC---UGUGUGU----GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 128803 0.67 0.969401
Target:  5'- ---cGGCGaGCGCgGCGCGCGUGgCCCc -3'
miRNA:   3'- caaaCUGUcUGUG-UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 21856 0.67 0.966251
Target:  5'- ---cGACGGACAC-CAgGCGcCGguacuggCCCu -3'
miRNA:   3'- caaaCUGUCUGUGuGUgCGC-GCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 14124 0.67 0.966251
Target:  5'- ---cGGgAGAgGCGCGgaGCGCGcCCCg -3'
miRNA:   3'- caaaCUgUCUgUGUGUg-CGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 99985 0.67 0.966251
Target:  5'- --gUGGCGG-CGCugGCGCGCGa--- -3'
miRNA:   3'- caaACUGUCuGUGugUGCGCGCaggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.