miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 138693 0.66 0.979916
Target:  5'- ---aGACGGACGCGCugagcccgGCGCuGCGcgCCg -3'
miRNA:   3'- caaaCUGUCUGUGUG--------UGCG-CGCa-GGg -5'
29395 5' -52.3 NC_006151.1 + 41517 0.66 0.979916
Target:  5'- ---gGGCGGGCGC-CGCGgaGCGgaagCCCc -3'
miRNA:   3'- caaaCUGUCUGUGuGUGCg-CGCa---GGG- -5'
29395 5' -52.3 NC_006151.1 + 47263 0.66 0.979916
Target:  5'- ---aGAUGGAcCGCuccgGCGCGCaGCGUCCg -3'
miRNA:   3'- caaaCUGUCU-GUG----UGUGCG-CGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 51955 0.66 0.979916
Target:  5'- ----cGCAGcacCACGCGCgGCGUGUCCa -3'
miRNA:   3'- caaacUGUCu--GUGUGUG-CGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 81694 0.66 0.979916
Target:  5'- ---cGACGGuCGCcCGCGCGagGUCCa -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCg-CAGGg -5'
29395 5' -52.3 NC_006151.1 + 130781 0.66 0.979916
Target:  5'- ---cGuCGGGCAUgu-CGCGCGUCCa -3'
miRNA:   3'- caaaCuGUCUGUGuguGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 139826 0.66 0.979916
Target:  5'- -------cGACGCACGCGCGgGUCg- -3'
miRNA:   3'- caaacuguCUGUGUGUGCGCgCAGgg -5'
29395 5' -52.3 NC_006151.1 + 103099 0.66 0.977585
Target:  5'- ---gGACAcGCuCACGCGCGaCGUgaCCCa -3'
miRNA:   3'- caaaCUGUcUGuGUGUGCGC-GCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 54677 0.66 0.977585
Target:  5'- --cUGGcCGGGCAC-C-UGCGCGUCgCCg -3'
miRNA:   3'- caaACU-GUCUGUGuGuGCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 117287 0.66 0.977585
Target:  5'- ---cGACAG-CGCGCGCGCGagcugCUCg -3'
miRNA:   3'- caaaCUGUCuGUGUGUGCGCgca--GGG- -5'
29395 5' -52.3 NC_006151.1 + 118753 0.66 0.977585
Target:  5'- ---cGGCGGccgugcCACGCGCGUGCGgaaCCUg -3'
miRNA:   3'- caaaCUGUCu-----GUGUGUGCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 96368 0.66 0.977585
Target:  5'- ----aGCGGAgggccgccucCACGCGCGCGCGgugCCg -3'
miRNA:   3'- caaacUGUCU----------GUGUGUGCGCGCa--GGg -5'
29395 5' -52.3 NC_006151.1 + 59196 0.66 0.97506
Target:  5'- -cUUGcGCAGGuucuuCACGCGCGUGgGcCCCg -3'
miRNA:   3'- caAAC-UGUCU-----GUGUGUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 79233 0.66 0.97506
Target:  5'- -----cCAGcCGCGCAUGCGCagacaccaucGUCCCg -3'
miRNA:   3'- caaacuGUCuGUGUGUGCGCG----------CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 135146 0.66 0.97506
Target:  5'- ---gGGCAGACccaGCccgGCGgGCGCGgCCCg -3'
miRNA:   3'- caaaCUGUCUG---UG---UGUgCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 31588 0.66 0.97506
Target:  5'- ---gGGCGG-CGCGCucCGCGC-UCCCc -3'
miRNA:   3'- caaaCUGUCuGUGUGu-GCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 38088 0.66 0.97506
Target:  5'- --gUGACGGcCGCGCugcuCGCGC-UCCg -3'
miRNA:   3'- caaACUGUCuGUGUGu---GCGCGcAGGg -5'
29395 5' -52.3 NC_006151.1 + 56448 0.66 0.97506
Target:  5'- ---cGAC-GAgACGCGCGUGCuGcCCCa -3'
miRNA:   3'- caaaCUGuCUgUGUGUGCGCG-CaGGG- -5'
29395 5' -52.3 NC_006151.1 + 85358 0.66 0.97506
Target:  5'- ----cGCuGGCGCGCcuGCGCGUgGUCCCc -3'
miRNA:   3'- caaacUGuCUGUGUG--UGCGCG-CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 25481 0.66 0.97506
Target:  5'- ---cGACAGACuCGCGcCGCcucCGUCCUc -3'
miRNA:   3'- caaaCUGUCUGuGUGU-GCGc--GCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.