miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 21856 0.67 0.966251
Target:  5'- ---cGACGGACAC-CAgGCGcCGguacuggCCCu -3'
miRNA:   3'- caaaCUGUCUGUGuGUgCGC-GCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 24600 0.66 0.98403
Target:  5'- -cUUGACGucgcGAUGCAUgAUGCGCaUCCCg -3'
miRNA:   3'- caAACUGU----CUGUGUG-UGCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 25408 0.72 0.819124
Target:  5'- ---cGACGGGgGCGCcgccgccccACGCGCG-CCCg -3'
miRNA:   3'- caaaCUGUCUgUGUG---------UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 25481 0.66 0.97506
Target:  5'- ---cGACAGACuCGCGcCGCcucCGUCCUc -3'
miRNA:   3'- caaaCUGUCUGuGUGU-GCGc--GCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 26358 0.78 0.487063
Target:  5'- ---cGGCGGGC-CGCgucgggGCGCGCGUCCCc -3'
miRNA:   3'- caaaCUGUCUGuGUG------UGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 27042 0.76 0.567671
Target:  5'- ---cGAgGGGCGCugGCGCGUGUagCCCa -3'
miRNA:   3'- caaaCUgUCUGUGugUGCGCGCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 27086 0.7 0.890293
Target:  5'- ---gGGCGcGGCGCaggGCGCGCGUGUCgCCc -3'
miRNA:   3'- caaaCUGU-CUGUG---UGUGCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 28127 0.66 0.982061
Target:  5'- ---cGGCucgGGGCGCGCucCGCGCcucUCCCg -3'
miRNA:   3'- caaaCUG---UCUGUGUGu-GCGCGc--AGGG- -5'
29395 5' -52.3 NC_006151.1 + 28255 0.67 0.962879
Target:  5'- -aUUGGCcgGGGCcuCACACGUGgGcCCCg -3'
miRNA:   3'- caAACUG--UCUGu-GUGUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 28574 0.66 0.98403
Target:  5'- ---cGGgAGcccGCAUugGCcgGCGCGUCCCc -3'
miRNA:   3'- caaaCUgUC---UGUGugUG--CGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 30555 0.66 0.98403
Target:  5'- cGUUccGC-GcCGCACGCGC-CGUCCCg -3'
miRNA:   3'- -CAAacUGuCuGUGUGUGCGcGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 31320 0.67 0.971477
Target:  5'- ----cACGGACACGCGCGCccacccucggcgccGUGggCCCg -3'
miRNA:   3'- caaacUGUCUGUGUGUGCG--------------CGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 31434 0.66 0.982061
Target:  5'- ---gGACGGgguGCGCGCGCGUGUGUgUa -3'
miRNA:   3'- caaaCUGUC---UGUGUGUGCGCGCAgGg -5'
29395 5' -52.3 NC_006151.1 + 31588 0.66 0.97506
Target:  5'- ---gGGCGG-CGCGCucCGCGC-UCCCc -3'
miRNA:   3'- caaaCUGUCuGUGUGu-GCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 31769 0.69 0.932653
Target:  5'- ---cGGCGGGCGCGCGcCGgGCGgCUCu -3'
miRNA:   3'- caaaCUGUCUGUGUGU-GCgCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 33290 0.7 0.890293
Target:  5'- ---cGACccuuccccgGGGCGCGCGCGCGUGggaCCg -3'
miRNA:   3'- caaaCUG---------UCUGUGUGUGCGCGCag-GG- -5'
29395 5' -52.3 NC_006151.1 + 33928 0.67 0.962879
Target:  5'- ---gGGCGGAUcgAgGCcCGCGCGcCCCg -3'
miRNA:   3'- caaaCUGUCUG--UgUGuGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 35202 0.66 0.98403
Target:  5'- ---cGGgAGACGC-CucCGCGCG-CCCa -3'
miRNA:   3'- caaaCUgUCUGUGuGu-GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 37968 0.68 0.936216
Target:  5'- --cUGGCGGACGCcugcguccuggccuGC-CGCGgCGUCCUc -3'
miRNA:   3'- caaACUGUCUGUG--------------UGuGCGC-GCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 38088 0.66 0.97506
Target:  5'- --gUGACGGcCGCGCugcuCGCGC-UCCg -3'
miRNA:   3'- caaACUGUCuGUGUGu---GCGCGcAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.