miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 3105 0.69 0.915989
Target:  5'- ---cGAgAGGC-CGCcgcgGCGCGgGUCCCa -3'
miRNA:   3'- caaaCUgUCUGuGUG----UGCGCgCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 4039 0.66 0.97506
Target:  5'- ---aGGCGGccuCGCGgGCGCGgGcCCCg -3'
miRNA:   3'- caaaCUGUCu--GUGUgUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 8286 0.69 0.927349
Target:  5'- ---aGAguGuccccGCGCGgGCGcCGCGUCCCg -3'
miRNA:   3'- caaaCUguC-----UGUGUgUGC-GCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 8353 0.66 0.98403
Target:  5'- ---cGcCGGACGCGgAgGCGCGaggCCCc -3'
miRNA:   3'- caaaCuGUCUGUGUgUgCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 8957 0.71 0.827848
Target:  5'- -----cCGGuccCACGCGCGCGCGcCCCg -3'
miRNA:   3'- caaacuGUCu--GUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 10290 0.7 0.868512
Target:  5'- ---aGGCGG-CGgGCACGUcccGCGUCCCc -3'
miRNA:   3'- caaaCUGUCuGUgUGUGCG---CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 10497 0.69 0.903631
Target:  5'- ---cGGCGcGCGCccgccgccGCAgGCGCGUCCCc -3'
miRNA:   3'- caaaCUGUcUGUG--------UGUgCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 10818 0.71 0.860799
Target:  5'- ----cACAuACACACACGCGCGcgcacCCCg -3'
miRNA:   3'- caaacUGUcUGUGUGUGCGCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 10938 0.67 0.969401
Target:  5'- ---cGAgGGugG-GCGCGCGUGUCCg -3'
miRNA:   3'- caaaCUgUCugUgUGUGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 13114 0.71 0.852868
Target:  5'- ---cGGCGGGuCACGCGCGCucccGCGacuUCCCg -3'
miRNA:   3'- caaaCUGUCU-GUGUGUGCG----CGC---AGGG- -5'
29395 5' -52.3 NC_006151.1 + 14124 0.67 0.966251
Target:  5'- ---cGGgAGAgGCGCGgaGCGCGcCCCg -3'
miRNA:   3'- caaaCUgUCUgUGUGUg-CGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 15161 0.8 0.394707
Target:  5'- --gUGACGGGCG-ACACGCGCG-CCCu -3'
miRNA:   3'- caaACUGUCUGUgUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 15196 0.68 0.94251
Target:  5'- cUUUGACuuuuacgccauGGGCuACACGCGCcaGCGcCCCu -3'
miRNA:   3'- cAAACUG-----------UCUG-UGUGUGCG--CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 15893 0.67 0.969401
Target:  5'- ---cGGgGGACGCGCGCcccgaCGCGgCCCg -3'
miRNA:   3'- caaaCUgUCUGUGUGUGc----GCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 18497 0.73 0.723596
Target:  5'- ---gGGCAGGCugguguacaccgGCgagaGCAUGCGCGUCCCc -3'
miRNA:   3'- caaaCUGUCUG------------UG----UGUGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 19124 0.73 0.733683
Target:  5'- ----cGCGGGgGCGCGCGCGCGUaguaCCa -3'
miRNA:   3'- caaacUGUCUgUGUGUGCGCGCAg---GG- -5'
29395 5' -52.3 NC_006151.1 + 19506 0.67 0.969401
Target:  5'- ---gGGCcucGGGgACGCAgGCGCGgCCCa -3'
miRNA:   3'- caaaCUG---UCUgUGUGUgCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 20769 0.67 0.95928
Target:  5'- ---cGGCGGACGCGCGcCGgGCGagcggCUCg -3'
miRNA:   3'- caaaCUGUCUGUGUGU-GCgCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 21250 0.69 0.903631
Target:  5'- ---aGAUguAGACGCACACGCccaccaggaGCGcgCCCa -3'
miRNA:   3'- caaaCUG--UCUGUGUGUGCG---------CGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 21488 0.67 0.958907
Target:  5'- ---gGGCAGGCggccgggGgGCGCGgGCGUCaCCg -3'
miRNA:   3'- caaaCUGUCUG-------UgUGUGCgCGCAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.