miRNA display CGI


Results 1 - 20 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 121614 1.13 0.003323
Target:  5'- cGUUUGACAGACACACACGCGCGUCCCg -3'
miRNA:   3'- -CAAACUGUCUGUGUGUGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 78935 0.84 0.241138
Target:  5'- ---cGACAcGCACACACGCGCGcgCCCg -3'
miRNA:   3'- caaaCUGUcUGUGUGUGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 128634 0.83 0.266008
Target:  5'- --gUGGCGGAC-CACGCGCGCGUCgaCCg -3'
miRNA:   3'- caaACUGUCUGuGUGUGCGCGCAG--GG- -5'
29395 5' -52.3 NC_006151.1 + 94947 0.83 0.272541
Target:  5'- ----uGCGGACGCGCA-GCGCGUCCCa -3'
miRNA:   3'- caaacUGUCUGUGUGUgCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 97006 0.83 0.272541
Target:  5'- ---gGGgGGACACGCGCGCGUGUgCCCg -3'
miRNA:   3'- caaaCUgUCUGUGUGUGCGCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 117214 0.81 0.337173
Target:  5'- ---aGACGGGCGCggcgucgacgACGCGCGCGUCCa -3'
miRNA:   3'- caaaCUGUCUGUG----------UGUGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 15161 0.8 0.394707
Target:  5'- --gUGACGGGCG-ACACGCGCG-CCCu -3'
miRNA:   3'- caaACUGUCUGUgUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 112972 0.79 0.412272
Target:  5'- --gUGGCGGACGCGCGCGCGCcgccgagCCUg -3'
miRNA:   3'- caaACUGUCUGUGUGUGCGCGca-----GGG- -5'
29395 5' -52.3 NC_006151.1 + 130363 0.79 0.448807
Target:  5'- -gUUGACGGcCGCGCGCGCcgcgGCGUCCa -3'
miRNA:   3'- caAACUGUCuGUGUGUGCG----CGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 26358 0.78 0.487063
Target:  5'- ---cGGCGGGC-CGCgucgggGCGCGCGUCCCc -3'
miRNA:   3'- caaaCUGUCUGuGUG------UGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 102541 0.77 0.526791
Target:  5'- ---aGACgguGGugGCGCGCGCGCGggCCCu -3'
miRNA:   3'- caaaCUG---UCugUGUGUGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 100009 0.77 0.526791
Target:  5'- --cUGACGGugGCGCACGCGCG-Ca- -3'
miRNA:   3'- caaACUGUCugUGUGUGCGCGCaGgg -5'
29395 5' -52.3 NC_006151.1 + 99329 0.77 0.536917
Target:  5'- --cUGACGGACGCGCAgCGCGcCGUCg- -3'
miRNA:   3'- caaACUGUCUGUGUGU-GCGC-GCAGgg -5'
29395 5' -52.3 NC_006151.1 + 75605 0.77 0.557364
Target:  5'- ---cGACGaggucGGCGCGCACGCGCGccgagCCCa -3'
miRNA:   3'- caaaCUGU-----CUGUGUGUGCGCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 137540 0.77 0.557364
Target:  5'- ---gGGCGGACugGgaCGCGgGCGUCCCc -3'
miRNA:   3'- caaaCUGUCUGugU--GUGCgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 27042 0.76 0.567671
Target:  5'- ---cGAgGGGCGCugGCGCGUGUagCCCa -3'
miRNA:   3'- caaaCUgUCUGUGugUGCGCGCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 56337 0.76 0.567671
Target:  5'- --gUGGCuGGaGCGCGCGCGCGcCCCg -3'
miRNA:   3'- caaACUGuCUgUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 139216 0.76 0.598851
Target:  5'- --cUGGCGGcgacgcugccGCACAuCGCGCGCGUCuCCg -3'
miRNA:   3'- caaACUGUC----------UGUGU-GUGCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 88802 0.76 0.609306
Target:  5'- ---cGACGGGCGCGa--GCGCGUCCg -3'
miRNA:   3'- caaaCUGUCUGUGUgugCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 113905 0.76 0.609306
Target:  5'- ---cGGCgcaAGACGCugACGCGCGcggCCCg -3'
miRNA:   3'- caaaCUG---UCUGUGugUGCGCGCa--GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.