Results 21 - 40 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 62053 | 0.75 | 0.651222 |
Target: 5'- --gUGGCGGuGCACGCGCGCGcCGUCg- -3' miRNA: 3'- caaACUGUC-UGUGUGUGCGC-GCAGgg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 136995 | 0.75 | 0.661683 |
Target: 5'- ---cGGCGGGCGCGCGCGCacggcgcuggGCG-CCCu -3' miRNA: 3'- caaaCUGUCUGUGUGUGCG----------CGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 88446 | 0.74 | 0.672119 |
Target: 5'- ----cACGGAgACGCGCGUGCGgcgCCCg -3' miRNA: 3'- caaacUGUCUgUGUGUGCGCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 106406 | 0.74 | 0.672119 |
Target: 5'- ---gGGCAGGCGCuguucACGCuGCGCGUCgCCg -3' miRNA: 3'- caaaCUGUCUGUG-----UGUG-CGCGCAG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 98107 | 0.74 | 0.672119 |
Target: 5'- --cUGGCguauaAGGCGCGCGCGCGCcgagCCCa -3' miRNA: 3'- caaACUG-----UCUGUGUGUGCGCGca--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 106357 | 0.74 | 0.682521 |
Target: 5'- ---gGACacgcuGGACGCGgGCGCGCG-CCCg -3' miRNA: 3'- caaaCUG-----UCUGUGUgUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 80583 | 0.74 | 0.692879 |
Target: 5'- ---cGACGGACgGCGCcCGUGCcGUCCCu -3' miRNA: 3'- caaaCUGUCUG-UGUGuGCGCG-CAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 58446 | 0.74 | 0.703184 |
Target: 5'- --gUGGCGuGCGCGCGCGCgGCGUCgCg -3' miRNA: 3'- caaACUGUcUGUGUGUGCG-CGCAGgG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 122518 | 0.73 | 0.723596 |
Target: 5'- ---gGACgcgcuccuGGACGCGCACGaCGUGUUCCg -3' miRNA: 3'- caaaCUG--------UCUGUGUGUGC-GCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 18497 | 0.73 | 0.723596 |
Target: 5'- ---gGGCAGGCugguguacaccgGCgagaGCAUGCGCGUCCCc -3' miRNA: 3'- caaaCUGUCUG------------UG----UGUGCGCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 115125 | 0.73 | 0.723596 |
Target: 5'- ---cGGC-GACGCGCGCGUGCGcCUCg -3' miRNA: 3'- caaaCUGuCUGUGUGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 19124 | 0.73 | 0.733683 |
Target: 5'- ----cGCGGGgGCGCGCGCGCGUaguaCCa -3' miRNA: 3'- caaacUGUCUgUGUGUGCGCGCAg---GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 113521 | 0.73 | 0.740689 |
Target: 5'- --gUGGCGGACGCGCGCuuccuggcgcugauGCGCGccgcgggCCCg -3' miRNA: 3'- caaACUGUCUGUGUGUG--------------CGCGCa------GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 77939 | 0.73 | 0.770123 |
Target: 5'- ---gGGCGGGCGCGCggcccccacgcugaGCGUGCG-CCCg -3' miRNA: 3'- caaaCUGUCUGUGUG--------------UGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 134826 | 0.72 | 0.779689 |
Target: 5'- ---gGACGGuggcgaccgcgcgcGCACACACGCGgGgCCCg -3' miRNA: 3'- caaaCUGUC--------------UGUGUGUGCGCgCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 120331 | 0.72 | 0.791916 |
Target: 5'- -----uCGGACGC-CGCGCGCG-CCCg -3' miRNA: 3'- caaacuGUCUGUGuGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 58905 | 0.72 | 0.791916 |
Target: 5'- ---cGGCc-GCGCACACGCGC-UCCCc -3' miRNA: 3'- caaaCUGucUGUGUGUGCGCGcAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 68525 | 0.72 | 0.801149 |
Target: 5'- ---gGGCAG-CACcaccaGCGCGCGCagGUCCCg -3' miRNA: 3'- caaaCUGUCuGUG-----UGUGCGCG--CAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102330 | 0.72 | 0.801149 |
Target: 5'- --cUGACGGAgGCGCGCGCGC-UgCUg -3' miRNA: 3'- caaACUGUCUgUGUGUGCGCGcAgGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 123217 | 0.72 | 0.804798 |
Target: 5'- --gUGGCGGuggccgccggguuccGCGCACgGCGCGCGUUCUg -3' miRNA: 3'- caaACUGUC---------------UGUGUG-UGCGCGCAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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