miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 142922 0.71 0.844728
Target:  5'- ---gGGCAccGACACcguccccaccACACGCGCG-CCCg -3'
miRNA:   3'- caaaCUGU--CUGUG----------UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 141745 0.72 0.819124
Target:  5'- ---gGAgGGGCGCgGgGCGCGCGcCCCg -3'
miRNA:   3'- caaaCUgUCUGUG-UgUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 139826 0.66 0.979916
Target:  5'- -------cGACGCACGCGCGgGUCg- -3'
miRNA:   3'- caaacuguCUGUGUGUGCGCgCAGgg -5'
29395 5' -52.3 NC_006151.1 + 139281 0.7 0.890293
Target:  5'- ---cGGCGGACGCGC-CGCccucgGCGUCUg -3'
miRNA:   3'- caaaCUGUCUGUGUGuGCG-----CGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 139256 0.72 0.819124
Target:  5'- ---cGACGGcCACGCcCGCGCGcUCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGuGCGCGC-AGGg -5'
29395 5' -52.3 NC_006151.1 + 139216 0.76 0.598851
Target:  5'- --cUGGCGGcgacgcugccGCACAuCGCGCGCGUCuCCg -3'
miRNA:   3'- caaACUGUC----------UGUGU-GUGCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 138693 0.66 0.979916
Target:  5'- ---aGACGGACGCGCugagcccgGCGCuGCGcgCCg -3'
miRNA:   3'- caaaCUGUCUGUGUG--------UGCG-CGCa-GGg -5'
29395 5' -52.3 NC_006151.1 + 138331 0.68 0.94251
Target:  5'- ----uGCGGGCccgGCACGCGCGCaG-CCCg -3'
miRNA:   3'- caaacUGUCUG---UGUGUGCGCG-CaGGG- -5'
29395 5' -52.3 NC_006151.1 + 138114 0.72 0.810221
Target:  5'- --cUGGCGGACAUGC-UGCGCGgCCUg -3'
miRNA:   3'- caaACUGUCUGUGUGuGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 137540 0.77 0.557364
Target:  5'- ---gGGCGGACugGgaCGCGgGCGUCCCc -3'
miRNA:   3'- caaaCUGUCUGugU--GUGCgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 137280 0.69 0.926805
Target:  5'- ----cGCGGGCACGCucgaggcggccauGCGCGgGUUCCg -3'
miRNA:   3'- caaacUGUCUGUGUG-------------UGCGCgCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 136995 0.75 0.661683
Target:  5'- ---cGGCGGGCGCGCGCGCacggcgcuggGCG-CCCu -3'
miRNA:   3'- caaaCUGUCUGUGUGUGCG----------CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 136817 0.68 0.947066
Target:  5'- ---cGGCcGACGCGC-CGCGCGggCUCu -3'
miRNA:   3'- caaaCUGuCUGUGUGuGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 135452 0.71 0.860799
Target:  5'- --cUGGCAGGCcugguagguGCGCGCcaGCGUGUCCg -3'
miRNA:   3'- caaACUGUCUG---------UGUGUG--CGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 135146 0.66 0.97506
Target:  5'- ---gGGCAGACccaGCccgGCGgGCGCGgCCCg -3'
miRNA:   3'- caaaCUGUCUG---UG---UGUgCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 134826 0.72 0.779689
Target:  5'- ---gGACGGuggcgaccgcgcgcGCACACACGCGgGgCCCg -3'
miRNA:   3'- caaaCUGUC--------------UGUGUGUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 133917 0.7 0.897083
Target:  5'- --cUGGCGG-CGCAgGCG-GCGUUCCa -3'
miRNA:   3'- caaACUGUCuGUGUgUGCgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 133156 0.68 0.946622
Target:  5'- ---cGGCGGcgGCGCGgGCGUgggccucggccacGCGUCCCa -3'
miRNA:   3'- caaaCUGUC--UGUGUgUGCG-------------CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 132841 0.67 0.95928
Target:  5'- ---gGACGGcCAC-CACGgGCGgccggCCCg -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCgCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 132798 0.68 0.937706
Target:  5'- --cUGAUgAGGCGCugGuacaGCGCGUCCg -3'
miRNA:   3'- caaACUG-UCUGUGugUg---CGCGCAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.