Results 41 - 60 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 118883 | 0.67 | 0.470221 |
Target: 5'- cGGCgCGGCGGCGacgcGGCCGCcGGcgGCcucGAg -3' miRNA: 3'- -CCG-GCUGCCGC----CCGGCGaCCa-CGu--CU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 115563 | 0.67 | 0.470221 |
Target: 5'- cGCCcGCgGGCGGGCgCGC-GG-GCAGGu -3' miRNA: 3'- cCGGcUG-CCGCCCG-GCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 107048 | 0.67 | 0.470221 |
Target: 5'- uGGCCGGCGaGCcGGCCugccucguGCUGGUGgAc- -3' miRNA: 3'- -CCGGCUGC-CGcCCGG--------CGACCACgUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 97360 | 0.67 | 0.470221 |
Target: 5'- aGGCCGcggcgGCGGCGGGC-GCg---GCGGGg -3' miRNA: 3'- -CCGGC-----UGCCGCCCGgCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 81736 | 0.67 | 0.470221 |
Target: 5'- cGCCGAagguccaGGCGGcGCggaGCUGGUccGCGGGc -3' miRNA: 3'- cCGGCUg------CCGCC-CGg--CGACCA--CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 134101 | 0.67 | 0.470221 |
Target: 5'- uGGaCgGAgGGC-GGCUGCUGGUGUgccGGAg -3' miRNA: 3'- -CC-GgCUgCCGcCCGGCGACCACG---UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 39891 | 0.67 | 0.491828 |
Target: 5'- cGGCCGaguugcgcgccuucuGCGccGCGGGCUGCUGGaGCc-- -3' miRNA: 3'- -CCGGC---------------UGC--CGCCCGGCGACCaCGucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 4208 | 0.67 | 0.497301 |
Target: 5'- gGGCCcgagGGCGGcCGGGgCGCgggcgGGcGCGGGc -3' miRNA: 3'- -CCGG----CUGCC-GCCCgGCGa----CCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 6290 | 0.67 | 0.515739 |
Target: 5'- cGGCCG-CGGCGgcGGCCGCcaGGaGCuGGc -3' miRNA: 3'- -CCGGCuGCCGC--CCGGCGa-CCaCGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 55225 | 0.67 | 0.515739 |
Target: 5'- gGGCaCcACGGCGccGGCgCGCagccGGUGCAGGa -3' miRNA: 3'- -CCG-GcUGCCGC--CCG-GCGa---CCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 2385 | 0.67 | 0.515739 |
Target: 5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3' miRNA: 3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 26216 | 0.67 | 0.515739 |
Target: 5'- aGGuUCGAgCGGCGGGCCGCc-GUGUuuauuGAg -3' miRNA: 3'- -CC-GGCU-GCCGCCCGGCGacCACGu----CU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 84627 | 0.67 | 0.512955 |
Target: 5'- cGGCCGccGCGGCGcuggacaacgccauGGCCGCgGGcGCGc- -3' miRNA: 3'- -CCGGC--UGCCGC--------------CCGGCGaCCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 104003 | 0.67 | 0.506484 |
Target: 5'- cGGCCGuggaGGCGcGCCGCgcg-GCGGAg -3' miRNA: 3'- -CCGGCug--CCGCcCGGCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 76661 | 0.67 | 0.506484 |
Target: 5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3' miRNA: 3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 39931 | 0.67 | 0.506484 |
Target: 5'- -cCCGACGcCGaGGCCGCcccgcUGGUGCuGAc -3' miRNA: 3'- ccGGCUGCcGC-CCGGCG-----ACCACGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 33203 | 0.67 | 0.506484 |
Target: 5'- cGGCCGGCGcccccggagcacGCGGGgCGCcccGGcggGCGGGa -3' miRNA: 3'- -CCGGCUGC------------CGCCCgGCGa--CCa--CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 139643 | 0.67 | 0.497301 |
Target: 5'- cGCCGGCGcGgGGGUCGCg---GCGGGc -3' miRNA: 3'- cCGGCUGC-CgCCCGGCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 10935 | 0.67 | 0.497301 |
Target: 5'- cGCCGAgGGUGGGCgCGCguguccGUGUgAGAg -3' miRNA: 3'- cCGGCUgCCGCCCG-GCGac----CACG-UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 131102 | 0.67 | 0.497301 |
Target: 5'- cGUCGGCGGgGGGCCcgGCcgcGGcGCGGGa -3' miRNA: 3'- cCGGCUGCCgCCCGG--CGa--CCaCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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