Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 126135 | 0.66 | 0.572524 |
Target: 5'- gGGgCGcuCGccauCGGGCUGCUGGUGCuGGc -3' miRNA: 3'- -CCgGCu-GCc---GCCCGGCGACCACGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 92566 | 0.66 | 0.572524 |
Target: 5'- uGGCCGAgucgcUGGaGGGCCGCgaGGUGg--- -3' miRNA: 3'- -CCGGCU-----GCCgCCCGGCGa-CCACgucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 91746 | 0.66 | 0.572524 |
Target: 5'- cGGCgGGCGaGCGGGCUcggGCgggcGGUGUgcgccAGAc -3' miRNA: 3'- -CCGgCUGC-CGCCCGG---CGa---CCACG-----UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 30615 | 0.66 | 0.572524 |
Target: 5'- gGGCgGuCGGCGuGCgCGCU-GUGCGGGu -3' miRNA: 3'- -CCGgCuGCCGCcCG-GCGAcCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 22074 | 0.66 | 0.572524 |
Target: 5'- aGGCCacGugGGCgcgguacguGGGCCGCcGGUGgGc- -3' miRNA: 3'- -CCGG--CugCCG---------CCCGGCGaCCACgUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 103790 | 0.66 | 0.569642 |
Target: 5'- cGCUGGCGGCGcugcaGGCCGCgcugucggcggccgUGGcgGCGGc -3' miRNA: 3'- cCGGCUGCCGC-----CCGGCG--------------ACCa-CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 119041 | 0.66 | 0.562934 |
Target: 5'- cGCCaagGACGGCGGcGCCGC-GGccgccuccGCGGGc -3' miRNA: 3'- cCGG---CUGCCGCC-CGGCGaCCa-------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 56195 | 0.66 | 0.5572 |
Target: 5'- uGCCGcCGGUGGcGCUGCcgcaccgccuggcccUGGUGCGc- -3' miRNA: 3'- cCGGCuGCCGCC-CGGCG---------------ACCACGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 133627 | 0.66 | 0.562934 |
Target: 5'- gGGUcgCGGCGGCcgGGGCgGUgguccgGGUGCgAGAg -3' miRNA: 3'- -CCG--GCUGCCG--CCCGgCGa-----CCACG-UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 20155 | 0.66 | 0.562934 |
Target: 5'- cGGCgCGugGaccgcCGGGCCGCgcccgGGUcGCGGc -3' miRNA: 3'- -CCG-GCugCc----GCCCGGCGa----CCA-CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 56567 | 0.66 | 0.562934 |
Target: 5'- cGGgCGACGcGCcgccGCCcgacggGCUGGUGCGGAc -3' miRNA: 3'- -CCgGCUGC-CGcc--CGG------CGACCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 117254 | 0.66 | 0.562934 |
Target: 5'- gGGcCCGAgGcGCGGGCCGCgc--GCGGc -3' miRNA: 3'- -CC-GGCUgC-CGCCCGGCGaccaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 132038 | 0.66 | 0.562934 |
Target: 5'- aGCCGGCGGCGcGCgGCaGcGcgGCGGAg -3' miRNA: 3'- cCGGCUGCCGCcCGgCGaC-Ca-CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 104003 | 0.67 | 0.506484 |
Target: 5'- cGGCCGuggaGGCGcGCCGCgcg-GCGGAg -3' miRNA: 3'- -CCGGCug--CCGCcCGGCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 84627 | 0.67 | 0.512955 |
Target: 5'- cGGCCGccGCGGCGcuggacaacgccauGGCCGCgGGcGCGc- -3' miRNA: 3'- -CCGGC--UGCCGC--------------CCGGCGaCCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 26216 | 0.67 | 0.515739 |
Target: 5'- aGGuUCGAgCGGCGGGCCGCc-GUGUuuauuGAg -3' miRNA: 3'- -CC-GGCU-GCCGCCCGGCGacCACGu----CU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 2385 | 0.67 | 0.515739 |
Target: 5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3' miRNA: 3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 55225 | 0.67 | 0.515739 |
Target: 5'- gGGCaCcACGGCGccGGCgCGCagccGGUGCAGGa -3' miRNA: 3'- -CCG-GcUGCCGC--CCG-GCGa---CCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 6290 | 0.67 | 0.515739 |
Target: 5'- cGGCCG-CGGCGgcGGCCGCcaGGaGCuGGc -3' miRNA: 3'- -CCGGCuGCCGC--CCGGCGa-CCaCGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 76661 | 0.67 | 0.506484 |
Target: 5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3' miRNA: 3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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