miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 17487 0.72 0.244062
Target:  5'- cGUCGGCGGCGcGCCGCUGcUGCAc- -3'
miRNA:   3'- cCGGCUGCCGCcCGGCGACcACGUcu -5'
29396 5' -63.8 NC_006151.1 + 18159 0.71 0.29883
Target:  5'- gGGgCGGCGGCGGGCaUGUcGGaaUGCGGGc -3'
miRNA:   3'- -CCgGCUGCCGCCCG-GCGaCC--ACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 20155 0.66 0.562934
Target:  5'- cGGCgCGugGaccgcCGGGCCGCgcccgGGUcGCGGc -3'
miRNA:   3'- -CCG-GCugCc----GCCCGGCGa----CCA-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 22074 0.66 0.572524
Target:  5'- aGGCCacGugGGCgcgguacguGGGCCGCcGGUGgGc- -3'
miRNA:   3'- -CCGG--CugCCG---------CCCGGCGaCCACgUcu -5'
29396 5' -63.8 NC_006151.1 + 23001 0.69 0.385922
Target:  5'- cGGCCGcGCGGgugGGGgCGCgggGGUGguGGa -3'
miRNA:   3'- -CCGGC-UGCCg--CCCgGCGa--CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 26216 0.67 0.515739
Target:  5'- aGGuUCGAgCGGCGGGCCGCc-GUGUuuauuGAg -3'
miRNA:   3'- -CC-GGCU-GCCGCCCGGCGacCACGu----CU- -5'
29396 5' -63.8 NC_006151.1 + 26286 0.66 0.534446
Target:  5'- gGGCgGACGGUGGGgUGgggggGGUGgGGGg -3'
miRNA:   3'- -CCGgCUGCCGCCCgGCga---CCACgUCU- -5'
29396 5' -63.8 NC_006151.1 + 26351 0.78 0.103367
Target:  5'- gGGgCGGCGGCGGGCCGCgucgGGgcgcgcgucccccgGCGGGc -3'
miRNA:   3'- -CCgGCUGCCGCCCGGCGa---CCa-------------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 27473 0.7 0.34768
Target:  5'- cGGUCGAgCGGgGGGUCGgCggGGUGguGGg -3'
miRNA:   3'- -CCGGCU-GCCgCCCGGC-Ga-CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 29432 0.7 0.34768
Target:  5'- uGGCCG-CGGgGGGCgGCggggagagGGgacGCGGAg -3'
miRNA:   3'- -CCGGCuGCCgCCCGgCGa-------CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 29601 0.78 0.099804
Target:  5'- cGGCCGcgGCGGCGGGg-GCUGGUGUGGGa -3'
miRNA:   3'- -CCGGC--UGCCGCCCggCGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 30615 0.66 0.572524
Target:  5'- gGGCgGuCGGCGuGCgCGCU-GUGCGGGu -3'
miRNA:   3'- -CCGgCuGCCGCcCG-GCGAcCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 30800 0.68 0.41845
Target:  5'- aGCCGAUGGCcccggGGGCaCGC-GG-GCGGGa -3'
miRNA:   3'- cCGGCUGCCG-----CCCG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 31688 0.66 0.534446
Target:  5'- gGGCCGcCGaGCcGGCCGCgccauUGGgcgccggGCGGAa -3'
miRNA:   3'- -CCGGCuGC-CGcCCGGCG-----ACCa------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 31760 0.69 0.378055
Target:  5'- cGCCugcGGCGGCGGGCgCGCgccGG-GCGGc -3'
miRNA:   3'- cCGG---CUGCCGCCCG-GCGa--CCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 32785 0.71 0.292302
Target:  5'- cGGCCG-CGGgGGGCCGaagcGGacGCGGAa -3'
miRNA:   3'- -CCGGCuGCCgCCCGGCga--CCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 33203 0.67 0.506484
Target:  5'- cGGCCGGCGcccccggagcacGCGGGgCGCcccGGcggGCGGGa -3'
miRNA:   3'- -CCGGCUGC------------CGCCCgGCGa--CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 35474 0.69 0.401977
Target:  5'- uGGCCGGCGGCcgccaucuuGGGCCGggcaUGcaaaGCAGAc -3'
miRNA:   3'- -CCGGCUGCCG---------CCCGGCg---ACca--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 36862 0.69 0.385922
Target:  5'- cGGCCucgccgggGACGGCGGGgCGCccccGCAGAg -3'
miRNA:   3'- -CCGG--------CUGCCGCCCgGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 37310 0.68 0.421794
Target:  5'- uGGCCGACGGgcccccgccgaccgaCGGGCCGCUGcucaccccGCucggGGAg -3'
miRNA:   3'- -CCGGCUGCC---------------GCCCGGCGACca------CG----UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.