miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 2385 0.67 0.515739
Target:  5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3'
miRNA:   3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5'
29396 5' -63.8 NC_006151.1 + 3131 0.67 0.485477
Target:  5'- aGGCCGGgcgcggggcgcccuCGGCGGGCUc--GGcGCAGAg -3'
miRNA:   3'- -CCGGCU--------------GCCGCCCGGcgaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 3245 0.66 0.54389
Target:  5'- cGGCgCGGCGGCGGagcggggcGCCGC-GGcgcGCGGc -3'
miRNA:   3'- -CCG-GCUGCCGCC--------CGGCGaCCa--CGUCu -5'
29396 5' -63.8 NC_006151.1 + 3392 0.71 0.29883
Target:  5'- gGGCCGccuCGGaGGGCCGCgGcGUGUGGGu -3'
miRNA:   3'- -CCGGCu--GCCgCCCGGCGaC-CACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 3428 0.72 0.26133
Target:  5'- cGGCCGggacGCGGCGGaaGCCGCcgucgGGcGCGGGg -3'
miRNA:   3'- -CCGGC----UGCCGCC--CGGCGa----CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 3739 0.78 0.099804
Target:  5'- gGGCCGGCGGCGGGggaGCUGGcGUAGc -3'
miRNA:   3'- -CCGGCUGCCGCCCgg-CGACCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 4006 0.67 0.479166
Target:  5'- uGGCCGG-GGCgaagaGGGCCGC-GGcGUAGGu -3'
miRNA:   3'- -CCGGCUgCCG-----CCCGGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 4208 0.67 0.497301
Target:  5'- gGGCCcgagGGCGGcCGGGgCGCgggcgGGcGCGGGc -3'
miRNA:   3'- -CCGG----CUGCC-GCCCgGCGa----CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 4342 0.68 0.426839
Target:  5'- cGGCgaaGGCGGCGcGGaCGCgGGcGCAGAg -3'
miRNA:   3'- -CCGg--CUGCCGC-CCgGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 4792 0.71 0.273387
Target:  5'- cGGCCG-CGGCgcgguagcGGGCCGC-GGccugGCGGAc -3'
miRNA:   3'- -CCGGCuGCCG--------CCCGGCGaCCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5031 0.68 0.461361
Target:  5'- gGGCCGGggcCGGgGaGGCCGCg---GCGGAg -3'
miRNA:   3'- -CCGGCU---GCCgC-CCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5073 0.76 0.131209
Target:  5'- aGGCCGAgGGCcgcgGGGCCGCggcgGGcgccgGCGGAg -3'
miRNA:   3'- -CCGGCUgCCG----CCCGGCGa---CCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5232 0.69 0.391493
Target:  5'- aGGCCGagcgccgcgcggcgGCGGCGGGggcCCGggGG-GCGGAg -3'
miRNA:   3'- -CCGGC--------------UGCCGCCC---GGCgaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5546 0.66 0.553387
Target:  5'- cGCCucgcGGCGGCGGGCUcgucgagcagggGCUcgcGGUGCuGGu -3'
miRNA:   3'- cCGG----CUGCCGCCCGG------------CGA---CCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 5653 0.73 0.233084
Target:  5'- cGGcCCGGCGGCGGGggagGCUGGggaaGCGGGc -3'
miRNA:   3'- -CC-GGCUGCCGCCCgg--CGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 6290 0.67 0.515739
Target:  5'- cGGCCG-CGGCGgcGGCCGCcaGGaGCuGGc -3'
miRNA:   3'- -CCGGCuGCCGC--CCGGCGa-CCaCGuCU- -5'
29396 5' -63.8 NC_006151.1 + 10196 0.69 0.393896
Target:  5'- cGGUCG-CGGCgcGGGCgGC-GGcUGCAGAg -3'
miRNA:   3'- -CCGGCuGCCG--CCCGgCGaCC-ACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 10935 0.67 0.497301
Target:  5'- cGCCGAgGGUGGGCgCGCguguccGUGUgAGAg -3'
miRNA:   3'- cCGGCUgCCGCCCG-GCGac----CACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 11036 0.68 0.461361
Target:  5'- gGGCCGGcCGGCcggGGGCCcggcCUGGacGCGGGc -3'
miRNA:   3'- -CCGGCU-GCCG---CCCGGc---GACCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 17118 0.7 0.355108
Target:  5'- gGGCucCGGCGGCGGuGCUGCgGGagGCGGc -3'
miRNA:   3'- -CCG--GCUGCCGCC-CGGCGaCCa-CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.