miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 121144 1.09 0.000558
Target:  5'- uGGCCGACGGCGGGCCGCUGGUGCAGAc -3'
miRNA:   3'- -CCGGCUGCCGCCCGGCGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 122943 0.84 0.03874
Target:  5'- cGCCGACGGCGGcGCCGCggggGGcGCGGAc -3'
miRNA:   3'- cCGGCUGCCGCC-CGGCGa---CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 84819 0.83 0.04765
Target:  5'- cGGCCG-CGGacgGGGCCGCgaGGUGCAGAu -3'
miRNA:   3'- -CCGGCuGCCg--CCCGGCGa-CCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 118151 0.81 0.061626
Target:  5'- cGCCGcgGCGGUGGcGCCGCUGGUGCGc- -3'
miRNA:   3'- cCGGC--UGCCGCC-CGGCGACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 112044 0.81 0.064863
Target:  5'- gGGCCGGCgGGCGGGCgGCggcGGUGguGGu -3'
miRNA:   3'- -CCGGCUG-CCGCCCGgCGa--CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 29601 0.78 0.099804
Target:  5'- cGGCCGcgGCGGCGGGg-GCUGGUGUGGGa -3'
miRNA:   3'- -CCGGC--UGCCGCCCggCGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 3739 0.78 0.099804
Target:  5'- gGGCCGGCGGCGGGggaGCUGGcGUAGc -3'
miRNA:   3'- -CCGGCUGCCGCCCgg-CGACCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 104271 0.78 0.102337
Target:  5'- cGGCgCGGCGGCGGGcCCGCcGcUGCAGGc -3'
miRNA:   3'- -CCG-GCUGCCGCCC-GGCGaCcACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 26351 0.78 0.103367
Target:  5'- gGGgCGGCGGCGGGCCGCgucgGGgcgcgcgucccccgGCGGGc -3'
miRNA:   3'- -CCgGCUGCCGCCCGGCGa---CCa-------------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5073 0.76 0.131209
Target:  5'- aGGCCGAgGGCcgcgGGGCCGCggcgGGcgccgGCGGAg -3'
miRNA:   3'- -CCGGCUgCCG----CCCGGCGa---CCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 37568 0.76 0.131209
Target:  5'- gGGCCGcCGGCGaGGCCaugucCUGGcUGCAGAa -3'
miRNA:   3'- -CCGGCuGCCGC-CCGGc----GACC-ACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 49842 0.76 0.144741
Target:  5'- cGG-CGGCGGCGGGCCcgcGCUGGgcGCAGc -3'
miRNA:   3'- -CCgGCUGCCGCCCGG---CGACCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 65779 0.75 0.171103
Target:  5'- cGCCGGCGGCGGcgauggcGCCGCccGGcGCGGAc -3'
miRNA:   3'- cCGGCUGCCGCC-------CGGCGa-CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 85166 0.75 0.171515
Target:  5'- gGGCCGGCGccGCGGGCgccgccgcccCGCUGGgcaucGCGGAc -3'
miRNA:   3'- -CCGGCUGC--CGCCCG----------GCGACCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 128537 0.74 0.179941
Target:  5'- aGGCC-ACGGCGGGcCCGCcGGcGCGGu -3'
miRNA:   3'- -CCGGcUGCCGCCC-GGCGaCCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 130943 0.74 0.18429
Target:  5'- gGGgCGGCGGgGGGUCGCgcgGGcGCGGGg -3'
miRNA:   3'- -CCgGCUGCCgCCCGGCGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 64856 0.74 0.188732
Target:  5'- gGGCCucGGCGGaGGGCCGCUGcccgGCGGGa -3'
miRNA:   3'- -CCGG--CUGCCgCCCGGCGACca--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 121832 0.74 0.193267
Target:  5'- uGCCGcuaccucgcGCGGCGGcuGCCGCUGGaggcGCAGAc -3'
miRNA:   3'- cCGGC---------UGCCGCC--CGGCGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 75134 0.73 0.202626
Target:  5'- cGGCCGGCGGCGcGGCCcaGCgcgGGcGCAcGGg -3'
miRNA:   3'- -CCGGCUGCCGC-CCGG--CGa--CCaCGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 81535 0.73 0.210887
Target:  5'- cGGCCG-CGGCGGcgcgcuCCGCggugcacauggccgUGGUGCGGAg -3'
miRNA:   3'- -CCGGCuGCCGCCc-----GGCG--------------ACCACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.