miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 131868 0.73 0.212375
Target:  5'- cGCCGGCGGCgucGGGUCGCaGG-GCAGc -3'
miRNA:   3'- cCGGCUGCCG---CCCGGCGaCCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 90666 0.73 0.224603
Target:  5'- cGCgGgGCGGCGGGCCGCUugucccccgcggcggGGgcgGCGGAc -3'
miRNA:   3'- cCGgC-UGCCGCCCGGCGA---------------CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 84675 0.73 0.227225
Target:  5'- aGGCCGA-GGUGgacgagcagcugcGGCCGCUGGagcgGCAGGu -3'
miRNA:   3'- -CCGGCUgCCGC-------------CCGGCGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5653 0.73 0.233084
Target:  5'- cGGcCCGGCGGCGGGggagGCUGGggaaGCGGGc -3'
miRNA:   3'- -CC-GGCUGCCGCCCgg--CGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 17487 0.72 0.244062
Target:  5'- cGUCGGCGGCGcGCCGCUGcUGCAc- -3'
miRNA:   3'- cCGGCUGCCGCcCGGCGACcACGUcu -5'
29396 5' -63.8 NC_006151.1 + 118242 0.72 0.24971
Target:  5'- gGGCuCGGCGGCGGGCucaCGCUGaaGCuGAc -3'
miRNA:   3'- -CCG-GCUGCCGCCCG---GCGACcaCGuCU- -5'
29396 5' -63.8 NC_006151.1 + 89716 0.72 0.24971
Target:  5'- -cCCGGCGGCGccGGCCGCggccgcGGUGguGGg -3'
miRNA:   3'- ccGGCUGCCGC--CCGGCGa-----CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 72266 0.72 0.24971
Target:  5'- cGCCGAgCGGCGuGGCCaGCaugcGGUGCGGc -3'
miRNA:   3'- cCGGCU-GCCGC-CCGG-CGa---CCACGUCu -5'
29396 5' -63.8 NC_006151.1 + 3428 0.72 0.26133
Target:  5'- cGGCCGggacGCGGCGGaaGCCGCcgucgGGcGCGGGg -3'
miRNA:   3'- -CCGGC----UGCCGCC--CGGCGa----CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 68764 0.72 0.26133
Target:  5'- aGCCGGCGGUGGcGCgCGCggcgaGGUGCGc- -3'
miRNA:   3'- cCGGCUGCCGCC-CG-GCGa----CCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 77373 0.72 0.267304
Target:  5'- cGCCGACGGCGGGgaCCGCgcguacuuuGUGCAcGGg -3'
miRNA:   3'- cCGGCUGCCGCCC--GGCGac-------CACGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 115658 0.71 0.272774
Target:  5'- cGGCCGAUGGUcgucacgGuGGCCGCcacgGGgagGCAGGg -3'
miRNA:   3'- -CCGGCUGCCG-------C-CCGGCGa---CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 4792 0.71 0.273387
Target:  5'- cGGCCG-CGGCgcgguagcGGGCCGC-GGccugGCGGAc -3'
miRNA:   3'- -CCGGCuGCCG--------CCCGGCGaCCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 112602 0.71 0.273387
Target:  5'- aGGCCG-CcGCGGcGCCGCUGGcGCuGGAc -3'
miRNA:   3'- -CCGGCuGcCGCC-CGGCGACCaCG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 137354 0.71 0.275851
Target:  5'- aGGCCGACGGCgacuGGGCCGCgcaccccugcuacGUGUacaAGAg -3'
miRNA:   3'- -CCGGCUGCCG----CCCGGCGac-----------CACG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 102967 0.71 0.279581
Target:  5'- cGCCcacGACGGCGcGCUGCUGGcGCAGc -3'
miRNA:   3'- cCGG---CUGCCGCcCGGCGACCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 109707 0.71 0.288439
Target:  5'- aGGCCGAgacccCGGCGaccccgcugcgcucGCCGCUGGaGCGGAu -3'
miRNA:   3'- -CCGGCU-----GCCGCc-------------CGGCGACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 97502 0.71 0.292302
Target:  5'- cGCCucGCGGCGGuGgCGCUGcGUGUAGAc -3'
miRNA:   3'- cCGGc-UGCCGCC-CgGCGAC-CACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 32785 0.71 0.292302
Target:  5'- cGGCCG-CGGgGGGCCGaagcGGacGCGGAa -3'
miRNA:   3'- -CCGGCuGCCgCCCGGCga--CCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 44198 0.71 0.292302
Target:  5'- cGGgCGGCGGCGGGagauggugauggUgGUUGGUGguGAu -3'
miRNA:   3'- -CCgGCUGCCGCCC------------GgCGACCACguCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.