miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 102122 0.66 0.547682
Target:  5'- gGGCCGgagccuguuccccggGCGcGcCGGGCUGCUGGaGCGc- -3'
miRNA:   3'- -CCGGC---------------UGC-C-GCCCGGCGACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 3245 0.66 0.54389
Target:  5'- cGGCgCGGCGGCGGagcggggcGCCGC-GGcgcGCGGc -3'
miRNA:   3'- -CCG-GCUGCCGCC--------CGGCGaCCa--CGUCu -5'
29396 5' -63.8 NC_006151.1 + 52368 0.66 0.534446
Target:  5'- cGCCGGCGcGCccccgGGGcCCGCgGGggcgGCGGGc -3'
miRNA:   3'- cCGGCUGC-CG-----CCC-GGCGaCCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 40518 0.66 0.534446
Target:  5'- cGGCCGgagguggcuGCGGCGGcGgCGgaGGUGgCGGc -3'
miRNA:   3'- -CCGGC---------UGCCGCC-CgGCgaCCAC-GUCu -5'
29396 5' -63.8 NC_006151.1 + 117032 0.66 0.534446
Target:  5'- gGGCCG-CaGGCGGuaccaGCCgaaGCUGG-GCAGGu -3'
miRNA:   3'- -CCGGCuG-CCGCC-----CGG---CGACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 31688 0.66 0.534446
Target:  5'- gGGCCGcCGaGCcGGCCGCgccauUGGgcgccggGCGGAa -3'
miRNA:   3'- -CCGGCuGC-CGcCCGGCG-----ACCa------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 26286 0.66 0.534446
Target:  5'- gGGCgGACGGUGGGgUGgggggGGUGgGGGg -3'
miRNA:   3'- -CCGgCUGCCGCCCgGCga---CCACgUCU- -5'
29396 5' -63.8 NC_006151.1 + 137908 0.66 0.525061
Target:  5'- aGGUCGACGGCGgcGGCUGCcacGG-GCGc- -3'
miRNA:   3'- -CCGGCUGCCGC--CCGGCGa--CCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 40567 0.66 0.525061
Target:  5'- cGG-CGGCGGC-GGCCGCg---GCGGAg -3'
miRNA:   3'- -CCgGCUGCCGcCCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 59847 0.66 0.525061
Target:  5'- cGGCCGGucCGGgGGGCgcaGCUGccGCAGc -3'
miRNA:   3'- -CCGGCU--GCCgCCCGg--CGACcaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 64537 0.66 0.525061
Target:  5'- cGGCCGcgucggggGCGGCGaGGCCG-UGGcGCGc- -3'
miRNA:   3'- -CCGGC--------UGCCGC-CCGGCgACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 90748 0.66 0.525061
Target:  5'- cGCCcucgggGGCGGCGGGCaCGgUGGcggggucgGCGGGc -3'
miRNA:   3'- cCGG------CUGCCGCCCG-GCgACCa-------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 92180 0.66 0.525061
Target:  5'- cGCCGACGGCgacgGGGCCGCcGacGCGc- -3'
miRNA:   3'- cCGGCUGCCG----CCCGGCGaCcaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 26216 0.67 0.515739
Target:  5'- aGGuUCGAgCGGCGGGCCGCc-GUGUuuauuGAg -3'
miRNA:   3'- -CC-GGCU-GCCGCCCGGCGacCACGu----CU- -5'
29396 5' -63.8 NC_006151.1 + 2385 0.67 0.515739
Target:  5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3'
miRNA:   3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5'
29396 5' -63.8 NC_006151.1 + 55225 0.67 0.515739
Target:  5'- gGGCaCcACGGCGccGGCgCGCagccGGUGCAGGa -3'
miRNA:   3'- -CCG-GcUGCCGC--CCG-GCGa---CCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 6290 0.67 0.515739
Target:  5'- cGGCCG-CGGCGgcGGCCGCcaGGaGCuGGc -3'
miRNA:   3'- -CCGGCuGCCGC--CCGGCGa-CCaCGuCU- -5'
29396 5' -63.8 NC_006151.1 + 125385 0.67 0.515739
Target:  5'- gGGCCGcAUcGC-GGCCGcCUGGUGCGa- -3'
miRNA:   3'- -CCGGC-UGcCGcCCGGC-GACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 84627 0.67 0.512955
Target:  5'- cGGCCGccGCGGCGcuggacaacgccauGGCCGCgGGcGCGc- -3'
miRNA:   3'- -CCGGC--UGCCGC--------------CCGGCGaCCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 76661 0.67 0.506484
Target:  5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3'
miRNA:   3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.