miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 76661 0.67 0.506484
Target:  5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3'
miRNA:   3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 39931 0.67 0.506484
Target:  5'- -cCCGACGcCGaGGCCGCcccgcUGGUGCuGAc -3'
miRNA:   3'- ccGGCUGCcGC-CCGGCG-----ACCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 33203 0.67 0.506484
Target:  5'- cGGCCGGCGcccccggagcacGCGGGgCGCcccGGcggGCGGGa -3'
miRNA:   3'- -CCGGCUGC------------CGCCCgGCGa--CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 4208 0.67 0.497301
Target:  5'- gGGCCcgagGGCGGcCGGGgCGCgggcgGGcGCGGGc -3'
miRNA:   3'- -CCGG----CUGCC-GCCCgGCGa----CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 131102 0.67 0.497301
Target:  5'- cGUCGGCGGgGGGCCcgGCcgcGGcGCGGGa -3'
miRNA:   3'- cCGGCUGCCgCCCGG--CGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 10935 0.67 0.497301
Target:  5'- cGCCGAgGGUGGGCgCGCguguccGUGUgAGAg -3'
miRNA:   3'- cCGGCUgCCGCCCG-GCGac----CACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 139643 0.67 0.497301
Target:  5'- cGCCGGCGcGgGGGUCGCg---GCGGGc -3'
miRNA:   3'- cCGGCUGC-CgCCCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 39891 0.67 0.491828
Target:  5'- cGGCCGaguugcgcgccuucuGCGccGCGGGCUGCUGGaGCc-- -3'
miRNA:   3'- -CCGGC---------------UGC--CGCCCGGCGACCaCGucu -5'
29396 5' -63.8 NC_006151.1 + 96817 0.67 0.488194
Target:  5'- gGGCUuuuaGCGGCGGGcCCGCcaaUGGgggaaaggGCGGGg -3'
miRNA:   3'- -CCGGc---UGCCGCCC-GGCG---ACCa-------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 113104 0.67 0.488194
Target:  5'- -aCCGGgGGCgGGGCCGC-GGacGCGGAc -3'
miRNA:   3'- ccGGCUgCCG-CCCGGCGaCCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 3131 0.67 0.485477
Target:  5'- aGGCCGGgcgcggggcgcccuCGGCGGGCUc--GGcGCAGAg -3'
miRNA:   3'- -CCGGCU--------------GCCGCCCGGcgaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 4006 0.67 0.479166
Target:  5'- uGGCCGG-GGCgaagaGGGCCGC-GGcGUAGGu -3'
miRNA:   3'- -CCGGCUgCCG-----CCCGGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 61761 0.67 0.479166
Target:  5'- cGGUCG-CGG-GGGCCG-UGGUGCu-- -3'
miRNA:   3'- -CCGGCuGCCgCCCGGCgACCACGucu -5'
29396 5' -63.8 NC_006151.1 + 119117 0.67 0.479166
Target:  5'- aGCCGcGCGGCcggccucgugGGGgCGCUGGUGUu-- -3'
miRNA:   3'- cCGGC-UGCCG----------CCCgGCGACCACGucu -5'
29396 5' -63.8 NC_006151.1 + 118883 0.67 0.470221
Target:  5'- cGGCgCGGCGGCGacgcGGCCGCcGGcgGCcucGAg -3'
miRNA:   3'- -CCG-GCUGCCGC----CCGGCGaCCa-CGu--CU- -5'
29396 5' -63.8 NC_006151.1 + 115563 0.67 0.470221
Target:  5'- cGCCcGCgGGCGGGCgCGC-GG-GCAGGu -3'
miRNA:   3'- cCGGcUG-CCGCCCG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 107048 0.67 0.470221
Target:  5'- uGGCCGGCGaGCcGGCCugccucguGCUGGUGgAc- -3'
miRNA:   3'- -CCGGCUGC-CGcCCGG--------CGACCACgUcu -5'
29396 5' -63.8 NC_006151.1 + 97360 0.67 0.470221
Target:  5'- aGGCCGcggcgGCGGCGGGC-GCg---GCGGGg -3'
miRNA:   3'- -CCGGC-----UGCCGCCCGgCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 81736 0.67 0.470221
Target:  5'- cGCCGAagguccaGGCGGcGCggaGCUGGUccGCGGGc -3'
miRNA:   3'- cCGGCUg------CCGCC-CGg--CGACCA--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 134101 0.67 0.470221
Target:  5'- uGGaCgGAgGGC-GGCUGCUGGUGUgccGGAg -3'
miRNA:   3'- -CC-GgCUgCCGcCCGGCGACCACG---UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.