miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 141701 0.7 0.355108
Target:  5'- cGGCUGGCGGCGGa-CGC-GGUGCccGGGg -3'
miRNA:   3'- -CCGGCUGCCGCCcgGCGaCCACG--UCU- -5'
29396 5' -63.8 NC_006151.1 + 141619 0.68 0.443911
Target:  5'- uGCCGGgaucgGGCGGGUCGCUGccGCGGc -3'
miRNA:   3'- cCGGCUg----CCGCCCGGCGACcaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 139643 0.67 0.497301
Target:  5'- cGCCGGCGcGgGGGUCGCg---GCGGGc -3'
miRNA:   3'- cCGGCUGC-CgCCCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 139190 0.7 0.333161
Target:  5'- uGCUGGCGGuCGGGgCGCUGGagcuccugGCGGc -3'
miRNA:   3'- cCGGCUGCC-GCCCgGCGACCa-------CGUCu -5'
29396 5' -63.8 NC_006151.1 + 137908 0.66 0.525061
Target:  5'- aGGUCGACGGCGgcGGCUGCcacGG-GCGc- -3'
miRNA:   3'- -CCGGCUGCCGC--CCGGCGa--CCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 137354 0.71 0.275851
Target:  5'- aGGCCGACGGCgacuGGGCCGCgcaccccugcuacGUGUacaAGAg -3'
miRNA:   3'- -CCGGCUGCCG----CCCGGCGac-----------CACG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 136988 0.7 0.333161
Target:  5'- cGCCgGGCGGCGGGCgcgcgcgcacggCGCUGG-GCGc- -3'
miRNA:   3'- cCGG-CUGCCGCCCG------------GCGACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 135105 0.7 0.340365
Target:  5'- gGGCgGGCGGCGGuaGCgCGCgGG-GCGGGc -3'
miRNA:   3'- -CCGgCUGCCGCC--CG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 134641 0.7 0.31909
Target:  5'- uGCUGACGcGCGaGCCGCUGG-GCuGGAu -3'
miRNA:   3'- cCGGCUGC-CGCcCGGCGACCaCG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 134101 0.67 0.470221
Target:  5'- uGGaCgGAgGGC-GGCUGCUGGUGUgccGGAg -3'
miRNA:   3'- -CC-GgCUgCCGcCCGGCGACCACG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 133627 0.66 0.562934
Target:  5'- gGGUcgCGGCGGCcgGGGCgGUgguccgGGUGCgAGAg -3'
miRNA:   3'- -CCG--GCUGCCG--CCCGgCGa-----CCACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 133396 0.68 0.443911
Target:  5'- cGGCCGGggcCGaGCGGGCgGUcuUGGccGCGGAc -3'
miRNA:   3'- -CCGGCU---GC-CGCCCGgCG--ACCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 133342 0.7 0.34768
Target:  5'- cGGCCGguuccGCGGCGGcGgUGgUGGUGguGGu -3'
miRNA:   3'- -CCGGC-----UGCCGCC-CgGCgACCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 132038 0.66 0.562934
Target:  5'- aGCCGGCGGCGcGCgGCaGcGcgGCGGAg -3'
miRNA:   3'- cCGGCUGCCGCcCGgCGaC-Ca-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 131954 0.69 0.401977
Target:  5'- cGGgCGAgGGCGGGCgGCaguacgugUGGUcGCGGu -3'
miRNA:   3'- -CCgGCUgCCGCCCGgCG--------ACCA-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 131868 0.73 0.212375
Target:  5'- cGCCGGCGGCgucGGGUCGCaGG-GCAGc -3'
miRNA:   3'- cCGGCUGCCG---CCCGGCGaCCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 131102 0.67 0.497301
Target:  5'- cGUCGGCGGgGGGCCcgGCcgcGGcGCGGGa -3'
miRNA:   3'- cCGGCUGCCgCCCGG--CGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 130943 0.74 0.18429
Target:  5'- gGGgCGGCGGgGGGUCGCgcgGGcGCGGGg -3'
miRNA:   3'- -CCgGCUGCCgCCCGGCGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 130265 0.68 0.417617
Target:  5'- aGGCCGGCGcGCGgccccgaGGCCGCgGGcGCGc- -3'
miRNA:   3'- -CCGGCUGC-CGC-------CCGGCGaCCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 129437 0.69 0.38513
Target:  5'- cGGCCccaaGugGGCGGGgCGCacggccgUGG-GCGGGa -3'
miRNA:   3'- -CCGG----CugCCGCCCgGCG-------ACCaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.