Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 38177 | 0.67 | 0.470221 |
Target: 5'- cGCCcGCaccGUGGcGCCGCUGGUGCGc- -3' miRNA: 3'- cCGGcUGc--CGCC-CGGCGACCACGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 5031 | 0.68 | 0.461361 |
Target: 5'- gGGCCGGggcCGGgGaGGCCGCg---GCGGAg -3' miRNA: 3'- -CCGGCU---GCCgC-CCGGCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 11036 | 0.68 | 0.461361 |
Target: 5'- gGGCCGGcCGGCcggGGGCCcggcCUGGacGCGGGc -3' miRNA: 3'- -CCGGCU-GCCG---CCCGGc---GACCa-CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 78655 | 0.68 | 0.461361 |
Target: 5'- uGGUggaGGCGGcCGGGgCGCgGGUGCuGGAc -3' miRNA: 3'- -CCGg--CUGCC-GCCCgGCGaCCACG-UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 127451 | 0.68 | 0.461361 |
Target: 5'- aGCCGGCGGCGcacGaagCGCUGGgcggcGCGGAa -3' miRNA: 3'- cCGGCUGCCGCc--Cg--GCGACCa----CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 71957 | 0.68 | 0.45259 |
Target: 5'- uGGCCGccuCGGCGuuGUCGC-GGUGCGGc -3' miRNA: 3'- -CCGGCu--GCCGCc-CGGCGaCCACGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 141619 | 0.68 | 0.443911 |
Target: 5'- uGCCGGgaucgGGCGGGUCGCUGccGCGGc -3' miRNA: 3'- cCGGCUg----CCGCCCGGCGACcaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 69699 | 0.68 | 0.443911 |
Target: 5'- cGUCGAUGGUGGccGCCGCcGGggGCAGc -3' miRNA: 3'- cCGGCUGCCGCC--CGGCGaCCa-CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 133396 | 0.68 | 0.443911 |
Target: 5'- cGGCCGGggcCGaGCGGGCgGUcuUGGccGCGGAc -3' miRNA: 3'- -CCGGCU---GC-CGCCCGgCG--ACCa-CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 106793 | 0.68 | 0.443911 |
Target: 5'- uGGCCGcgGCGGCGGuGCucgucggggcccCGCUGGUGa--- -3' miRNA: 3'- -CCGGC--UGCCGCC-CG------------GCGACCACgucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 121297 | 0.68 | 0.437892 |
Target: 5'- uGGCCGACcgcgacgGGCGcuggagcguggaggcGGCCGCcgagcUGGUGCGcGAc -3' miRNA: 3'- -CCGGCUG-------CCGC---------------CCGGCG-----ACCACGU-CU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 66950 | 0.68 | 0.435327 |
Target: 5'- aGG-CGGCGGCGGGCgcggcaCGCUGGaGCu-- -3' miRNA: 3'- -CCgGCUGCCGCCCG------GCGACCaCGucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 82612 | 0.68 | 0.435327 |
Target: 5'- gGGCCcGCGcGCGGgcGCCGCggugGGcGCGGGa -3' miRNA: 3'- -CCGGcUGC-CGCC--CGGCGa---CCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 73114 | 0.68 | 0.426839 |
Target: 5'- cGCCGGCGGCGcGCCcGCgcgGGUuGCAc- -3' miRNA: 3'- cCGGCUGCCGCcCGG-CGa--CCA-CGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 4342 | 0.68 | 0.426839 |
Target: 5'- cGGCgaaGGCGGCGcGGaCGCgGGcGCAGAg -3' miRNA: 3'- -CCGg--CUGCCGC-CCgGCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 90130 | 0.68 | 0.421794 |
Target: 5'- aGGCaGGCGGggcgguagugcgcguCGGGcCCGCUGGcgacGCAGAc -3' miRNA: 3'- -CCGgCUGCC---------------GCCC-GGCGACCa---CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 37310 | 0.68 | 0.421794 |
Target: 5'- uGGCCGACGGgcccccgccgaccgaCGGGCCGCUGcucaccccGCucggGGAg -3' miRNA: 3'- -CCGGCUGCC---------------GCCCGGCGACca------CG----UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 30800 | 0.68 | 0.41845 |
Target: 5'- aGCCGAUGGCcccggGGGCaCGC-GG-GCGGGa -3' miRNA: 3'- cCGGCUGCCG-----CCCG-GCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 130265 | 0.68 | 0.417617 |
Target: 5'- aGGCCGGCGcGCGgccccgaGGCCGCgGGcGCGc- -3' miRNA: 3'- -CCGGCUGC-CGC-------CCGGCGaCCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 68043 | 0.68 | 0.410162 |
Target: 5'- cGCCGgcGCGGCGGGCacggGCUcGGcgacggGCAGGu -3' miRNA: 3'- cCGGC--UGCCGCCCGg---CGA-CCa-----CGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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