miRNA display CGI


Results 41 - 60 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 37568 0.76 0.131209
Target:  5'- gGGCCGcCGGCGaGGCCaugucCUGGcUGCAGAa -3'
miRNA:   3'- -CCGGCuGCCGC-CCGGc----GACC-ACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 38177 0.67 0.470221
Target:  5'- cGCCcGCaccGUGGcGCCGCUGGUGCGc- -3'
miRNA:   3'- cCGGcUGc--CGCC-CGGCGACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 39891 0.67 0.491828
Target:  5'- cGGCCGaguugcgcgccuucuGCGccGCGGGCUGCUGGaGCc-- -3'
miRNA:   3'- -CCGGC---------------UGC--CGCCCGGCGACCaCGucu -5'
29396 5' -63.8 NC_006151.1 + 39931 0.67 0.506484
Target:  5'- -cCCGACGcCGaGGCCGCcccgcUGGUGCuGAc -3'
miRNA:   3'- ccGGCUGCcGC-CCGGCG-----ACCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 40518 0.66 0.534446
Target:  5'- cGGCCGgagguggcuGCGGCGGcGgCGgaGGUGgCGGc -3'
miRNA:   3'- -CCGGC---------UGCCGCC-CgGCgaCCAC-GUCu -5'
29396 5' -63.8 NC_006151.1 + 40567 0.66 0.525061
Target:  5'- cGG-CGGCGGC-GGCCGCg---GCGGAg -3'
miRNA:   3'- -CCgGCUGCCGcCCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 44198 0.71 0.292302
Target:  5'- cGGgCGGCGGCGGGagauggugauggUgGUUGGUGguGAu -3'
miRNA:   3'- -CCgGCUGCCGCCC------------GgCGACCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 49842 0.76 0.144741
Target:  5'- cGG-CGGCGGCGGGCCcgcGCUGGgcGCAGc -3'
miRNA:   3'- -CCgGCUGCCGCCCGG---CGACCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 50636 0.66 0.572524
Target:  5'- cGCCu-CGGCGacGGCCGC-GG-GCGGAc -3'
miRNA:   3'- cCGGcuGCCGC--CCGGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 52368 0.66 0.534446
Target:  5'- cGCCGGCGcGCccccgGGGcCCGCgGGggcgGCGGGc -3'
miRNA:   3'- cCGGCUGC-CG-----CCC-GGCGaCCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 55225 0.67 0.515739
Target:  5'- gGGCaCcACGGCGccGGCgCGCagccGGUGCAGGa -3'
miRNA:   3'- -CCG-GcUGCCGC--CCG-GCGa---CCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 56195 0.66 0.5572
Target:  5'- uGCCGcCGGUGGcGCUGCcgcaccgccuggcccUGGUGCGc- -3'
miRNA:   3'- cCGGCuGCCGCC-CGGCG---------------ACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 56297 0.66 0.553387
Target:  5'- cGGCgGA-GGCGGacGCCGCgcGGUGCcuGAg -3'
miRNA:   3'- -CCGgCUgCCGCC--CGGCGa-CCACGu-CU- -5'
29396 5' -63.8 NC_006151.1 + 56567 0.66 0.562934
Target:  5'- cGGgCGACGcGCcgccGCCcgacggGCUGGUGCGGAc -3'
miRNA:   3'- -CCgGCUGC-CGcc--CGG------CGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 57512 0.69 0.370296
Target:  5'- cGGCCGcgGCGGCGgcGGCCGCcuccGGcGCGGc -3'
miRNA:   3'- -CCGGC--UGCCGC--CCGGCGa---CCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 59847 0.66 0.525061
Target:  5'- cGGCCGGucCGGgGGGCgcaGCUGccGCAGc -3'
miRNA:   3'- -CCGGCU--GCCgCCCGg--CGACcaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 61761 0.67 0.479166
Target:  5'- cGGUCG-CGG-GGGCCG-UGGUGCu-- -3'
miRNA:   3'- -CCGGCuGCCgCCCGGCgACCACGucu -5'
29396 5' -63.8 NC_006151.1 + 64475 0.7 0.333161
Target:  5'- cGCCGccGCGGCGGGgacgcCCGCgGGcGCGGGc -3'
miRNA:   3'- cCGGC--UGCCGCCC-----GGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 64537 0.66 0.525061
Target:  5'- cGGCCGcgucggggGCGGCGaGGCCG-UGGcGCGc- -3'
miRNA:   3'- -CCGGC--------UGCCGC-CCGGCgACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 64856 0.74 0.188732
Target:  5'- gGGCCucGGCGGaGGGCCGCUGcccgGCGGGa -3'
miRNA:   3'- -CCGG--CUGCCgCCCGGCGACca--CGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.