miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 5' -56.1 NC_006151.1 + 101201 0.67 0.829101
Target:  5'- aCGCGuGcCUGCgcgagGGCCAGGcGugGACGg- -3'
miRNA:   3'- -GCGC-C-GACGa----CUGGUUC-CugCUGUag -5'
29397 5' -56.1 NC_006151.1 + 3268 0.67 0.829101
Target:  5'- cCGCGGCgcgcgGCgaUGugCGccAGGGCGGCcggGUCg -3'
miRNA:   3'- -GCGCCGa----CG--ACugGU--UCCUGCUG---UAG- -5'
29397 5' -56.1 NC_006151.1 + 83637 0.67 0.829101
Target:  5'- gGCGGCcuggUGCUGcGCCGugacgAGGGCcGCGUCc -3'
miRNA:   3'- gCGCCG----ACGAC-UGGU-----UCCUGcUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 116179 0.67 0.829101
Target:  5'- aCGCGGauCUGCUGGCCGucguaGAUGGCGc- -3'
miRNA:   3'- -GCGCC--GACGACUGGUuc---CUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 118885 0.67 0.829101
Target:  5'- gCGCGGCgGCgacgcGGCCGccGGCGGCcUCg -3'
miRNA:   3'- -GCGCCGaCGa----CUGGUucCUGCUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 134110 0.67 0.829101
Target:  5'- gGCGGCUGCUGGugugccggaguCCGGGGcCGGa--- -3'
miRNA:   3'- gCGCCGACGACU-----------GGUUCCuGCUguag -5'
29397 5' -56.1 NC_006151.1 + 112608 0.67 0.829101
Target:  5'- cCGCGGCgccGCUGGCgcuGGACGAg--- -3'
miRNA:   3'- -GCGCCGa--CGACUGguuCCUGCUguag -5'
29397 5' -56.1 NC_006151.1 + 61265 0.67 0.826555
Target:  5'- aCGCGGCggcagGCgguaucGugCGGGGACGgaagcucgacgggcGCGUCg -3'
miRNA:   3'- -GCGCCGa----CGa-----CugGUUCCUGC--------------UGUAG- -5'
29397 5' -56.1 NC_006151.1 + 19445 0.67 0.820553
Target:  5'- gGCGGCUcgcGCUGgagccgcggcACCucGGGCGGCAg- -3'
miRNA:   3'- gCGCCGA---CGAC----------UGGuuCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 52975 0.67 0.820553
Target:  5'- gGCGGCUcauguacgcGCUGACCucgcGGuGCGACGa- -3'
miRNA:   3'- gCGCCGA---------CGACUGGuu--CC-UGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 112033 0.67 0.820553
Target:  5'- gGCGGgaGCUGggGCCGGcgggcGGGCGGCGg- -3'
miRNA:   3'- gCGCCgaCGAC--UGGUU-----CCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 64534 0.67 0.820553
Target:  5'- cCGCGGCcGCg--UCGGGGGCGGCGa- -3'
miRNA:   3'- -GCGCCGaCGacuGGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 103271 0.67 0.820553
Target:  5'- gGCGGCcacgUGCUGAgCCAGGaGACGcGCGc- -3'
miRNA:   3'- gCGCCG----ACGACU-GGUUC-CUGC-UGUag -5'
29397 5' -56.1 NC_006151.1 + 110771 0.68 0.815341
Target:  5'- aCGCGGCUGCUuuauugaucgcgcggGGCUAgggcggGGGGCGAgGg- -3'
miRNA:   3'- -GCGCCGACGA---------------CUGGU------UCCUGCUgUag -5'
29397 5' -56.1 NC_006151.1 + 53220 0.68 0.811832
Target:  5'- gCGCGGUUGgUGAUCAGGuACGugAg- -3'
miRNA:   3'- -GCGCCGACgACUGGUUCcUGCugUag -5'
29397 5' -56.1 NC_006151.1 + 89507 0.68 0.811832
Target:  5'- gCGCGGgUG-UGGCgCAGcGGACGugGUCc -3'
miRNA:   3'- -GCGCCgACgACUG-GUU-CCUGCugUAG- -5'
29397 5' -56.1 NC_006151.1 + 99987 0.68 0.811832
Target:  5'- gGCGGC-GCUGGCgcgCGAGGACcuGACGg- -3'
miRNA:   3'- gCGCCGaCGACUG---GUUCCUG--CUGUag -5'
29397 5' -56.1 NC_006151.1 + 99570 0.68 0.802945
Target:  5'- gCGCGGCgcUGCUGcGCgAGGuGGCGGCGg- -3'
miRNA:   3'- -GCGCCG--ACGAC-UGgUUC-CUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 27332 0.68 0.802945
Target:  5'- gGgGGCUGCUccccggGACCGGGGuCGugGg- -3'
miRNA:   3'- gCgCCGACGA------CUGGUUCCuGCugUag -5'
29397 5' -56.1 NC_006151.1 + 128557 0.68 0.802945
Target:  5'- gCGCGG-UGCcGcCCAAagagcgccucGGGCGACAUCg -3'
miRNA:   3'- -GCGCCgACGaCuGGUU----------CCUGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.