miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 5' -56.1 NC_006151.1 + 103386 0.67 0.8614
Target:  5'- uGCGGCUGCgcgcGCUgcuGGGCGACu-- -3'
miRNA:   3'- gCGCCGACGac--UGGuu-CCUGCUGuag -5'
29397 5' -56.1 NC_006151.1 + 84657 0.67 0.8614
Target:  5'- cCGCgGGCgcGCgccucgaGGCCGAGGugGACGa- -3'
miRNA:   3'- -GCG-CCGa-CGa------CUGGUUCCugCUGUag -5'
29397 5' -56.1 NC_006151.1 + 67749 0.67 0.853624
Target:  5'- gCGCGGCgGCcccgUCGGGGuGCGGCGUCg -3'
miRNA:   3'- -GCGCCGaCGacu-GGUUCC-UGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 71328 0.67 0.853624
Target:  5'- gCGCGGCgGCUGcGCC---GACGACcUCg -3'
miRNA:   3'- -GCGCCGaCGAC-UGGuucCUGCUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 103513 0.67 0.853624
Target:  5'- cCGCGaGCUGCUGAcguCCGAccccggcgcgcuGGugGGCGc- -3'
miRNA:   3'- -GCGC-CGACGACU---GGUU------------CCugCUGUag -5'
29397 5' -56.1 NC_006151.1 + 122127 0.67 0.853624
Target:  5'- aCGCGGUggaccUGUcGGCCGuGGACGAguUCc -3'
miRNA:   3'- -GCGCCG-----ACGaCUGGUuCCUGCUguAG- -5'
29397 5' -56.1 NC_006151.1 + 127526 0.67 0.853624
Target:  5'- cCGUGGCgcgucaGCggGGCCcaGGGGGCGuCGUCg -3'
miRNA:   3'- -GCGCCGa-----CGa-CUGG--UUCCUGCuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 56971 0.67 0.845643
Target:  5'- gCGCGGUUGUacaUGccgaCGAGGGCGGCGa- -3'
miRNA:   3'- -GCGCCGACG---ACug--GUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 105097 0.67 0.845643
Target:  5'- aGUGGCUGC--ACCAGGcGCGGC-UCa -3'
miRNA:   3'- gCGCCGACGacUGGUUCcUGCUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 6131 0.67 0.845643
Target:  5'- nCGUGGCUccgGCcgcGGCCGcgAGGACGGCGg- -3'
miRNA:   3'- -GCGCCGA---CGa--CUGGU--UCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 106128 0.67 0.845643
Target:  5'- aCGCGGCcgUGCUGGCC----ACGACGcUCu -3'
miRNA:   3'- -GCGCCG--ACGACUGGuuccUGCUGU-AG- -5'
29397 5' -56.1 NC_006151.1 + 127849 0.67 0.845643
Target:  5'- uCGCGGCUGC--GCCGgagGGGGCGcCGc- -3'
miRNA:   3'- -GCGCCGACGacUGGU---UCCUGCuGUag -5'
29397 5' -56.1 NC_006151.1 + 38125 0.67 0.845643
Target:  5'- cCGgGGCcgGCccGGCCGAGcGGCGGCAg- -3'
miRNA:   3'- -GCgCCGa-CGa-CUGGUUC-CUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 72253 0.67 0.840761
Target:  5'- cCGCGGCcGCcgacgccgagcggcgUGGCCAGcaugcGGuGCGGCGUCa -3'
miRNA:   3'- -GCGCCGaCG---------------ACUGGUU-----CC-UGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 139622 0.67 0.840761
Target:  5'- gCGCGGCUGggGGCCAuccggcgccggcgcgGGGgucGCGGCGg- -3'
miRNA:   3'- -GCGCCGACgaCUGGU---------------UCC---UGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 105904 0.67 0.837467
Target:  5'- gGCGGCcaUGCUGugCAccGACGAgGg- -3'
miRNA:   3'- gCGCCG--ACGACugGUucCUGCUgUag -5'
29397 5' -56.1 NC_006151.1 + 123800 0.67 0.837467
Target:  5'- gGCGG-UGCUGGCCucGGACGuCu-- -3'
miRNA:   3'- gCGCCgACGACUGGuuCCUGCuGuag -5'
29397 5' -56.1 NC_006151.1 + 132070 0.67 0.837467
Target:  5'- gGCGGCUcCUcGACCAGGucGGCGcCGUCc -3'
miRNA:   3'- gCGCCGAcGA-CUGGUUC--CUGCuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 86386 0.67 0.832469
Target:  5'- aGCGGCUGCUGuACCugcuGAgcaacuaccugcccuCGGCGUCc -3'
miRNA:   3'- gCGCCGACGAC-UGGuuc-CU---------------GCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 134110 0.67 0.829101
Target:  5'- gGCGGCUGCUGGugugccggaguCCGGGGcCGGa--- -3'
miRNA:   3'- gCGCCGACGACU-----------GGUUCCuGCUguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.