miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 5' -56.1 NC_006151.1 + 33013 0.78 0.273124
Target:  5'- uGuCGGCUGUuggccguUGGCCGAGGACGACGg- -3'
miRNA:   3'- gC-GCCGACG-------ACUGGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 35971 0.72 0.594207
Target:  5'- gGCGGCcGCcgccgcGGCCGAGGAagagGGCAUCg -3'
miRNA:   3'- gCGCCGaCGa-----CUGGUUCCUg---CUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 37430 0.73 0.513652
Target:  5'- aGgGGCU-CUGGgaCGAGGACGACGUCc -3'
miRNA:   3'- gCgCCGAcGACUg-GUUCCUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 38125 0.67 0.845643
Target:  5'- cCGgGGCcgGCccGGCCGAGcGGCGGCAg- -3'
miRNA:   3'- -GCgCCGa-CGa-CUGGUUC-CUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 39949 0.7 0.676477
Target:  5'- cCGCuGgUGCUGACCccGGGCGcCGUCg -3'
miRNA:   3'- -GCGcCgACGACUGGuuCCUGCuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 40161 0.66 0.897028
Target:  5'- cCGCGGCccGCUcgGGCCcaucAAGGugGAggcCAUCu -3'
miRNA:   3'- -GCGCCGa-CGA--CUGG----UUCCugCU---GUAG- -5'
29397 5' -56.1 NC_006151.1 + 40526 0.67 0.8614
Target:  5'- gGUGGCUGCggcggcGGCgGAGGugGCGGCGg- -3'
miRNA:   3'- gCGCCGACGa-----CUGgUUCC--UGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 47289 0.75 0.419993
Target:  5'- cCGCGGCUGCUGugauGGGugGGCGg- -3'
miRNA:   3'- -GCGCCGACGACugguUCCugCUGUag -5'
29397 5' -56.1 NC_006151.1 + 48915 0.68 0.765919
Target:  5'- cCGCGGCcgcUGcCUGACCGAGGAgGuGCu-- -3'
miRNA:   3'- -GCGCCG---AC-GACUGGUUCCUgC-UGuag -5'
29397 5' -56.1 NC_006151.1 + 50228 0.66 0.897028
Target:  5'- uGCGGCUGC--ACCG-GGACaACGUg -3'
miRNA:   3'- gCGCCGACGacUGGUuCCUGcUGUAg -5'
29397 5' -56.1 NC_006151.1 + 52975 0.67 0.820553
Target:  5'- gGCGGCUcauguacgcGCUGACCucgcGGuGCGACGa- -3'
miRNA:   3'- gCGCCGA---------CGACUGGuu--CC-UGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 53220 0.68 0.811832
Target:  5'- gCGCGGUUGgUGAUCAGGuACGugAg- -3'
miRNA:   3'- -GCGCCGACgACUGGUUCcUGCugUag -5'
29397 5' -56.1 NC_006151.1 + 54730 0.69 0.726966
Target:  5'- gGUGGCcgaGCUcGCCGAGGccaugcGCGGCGUCa -3'
miRNA:   3'- gCGCCGa--CGAcUGGUUCC------UGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 55966 0.74 0.437917
Target:  5'- cCGCGGCUGgUGugCGAGGugcGCGAgGUg -3'
miRNA:   3'- -GCGCCGACgACugGUUCC---UGCUgUAg -5'
29397 5' -56.1 NC_006151.1 + 56971 0.67 0.845643
Target:  5'- gCGCGGUUGUacaUGccgaCGAGGGCGGCGa- -3'
miRNA:   3'- -GCGCCGACG---ACug--GUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 58459 0.69 0.746646
Target:  5'- gCGCGGCgucGCgGuCCAc-GACGACGUCg -3'
miRNA:   3'- -GCGCCGa--CGaCuGGUucCUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 61265 0.67 0.826555
Target:  5'- aCGCGGCggcagGCgguaucGugCGGGGACGgaagcucgacgggcGCGUCg -3'
miRNA:   3'- -GCGCCGa----CGa-----CugGUUCCUGC--------------UGUAG- -5'
29397 5' -56.1 NC_006151.1 + 64534 0.67 0.820553
Target:  5'- cCGCGGCcGCg--UCGGGGGCGGCGa- -3'
miRNA:   3'- -GCGCCGaCGacuGGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 65726 0.68 0.793901
Target:  5'- gCGCGGCUGCgcgcGGCCcAGGAgccgggaGGCcUCg -3'
miRNA:   3'- -GCGCCGACGa---CUGGuUCCUg------CUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 66795 0.75 0.411199
Target:  5'- gGCGGCgGCgggGcCCGGGGACGACGa- -3'
miRNA:   3'- gCGCCGaCGa--CuGGUUCCUGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.