miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 5' -56.1 NC_006151.1 + 3268 0.67 0.829101
Target:  5'- cCGCGGCgcgcgGCgaUGugCGccAGGGCGGCcggGUCg -3'
miRNA:   3'- -GCGCCGa----CG--ACugGU--UCCUGCUG---UAG- -5'
29397 5' -56.1 NC_006151.1 + 3994 0.72 0.58397
Target:  5'- cCGCGGCcacGUUGGCCGGGGcgaagagggccGCGGCGUa -3'
miRNA:   3'- -GCGCCGa--CGACUGGUUCC-----------UGCUGUAg -5'
29397 5' -56.1 NC_006151.1 + 4083 0.69 0.745671
Target:  5'- aGCGGCgccacggUGCgGGCgaCGAGGGCGACAg- -3'
miRNA:   3'- gCGCCG-------ACGaCUG--GUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 5244 0.66 0.890354
Target:  5'- gCGCGGCggcgGCgggGGCCcgGGGGGCGGa--- -3'
miRNA:   3'- -GCGCCGa---CGa--CUGG--UUCCUGCUguag -5'
29397 5' -56.1 NC_006151.1 + 5333 0.66 0.868967
Target:  5'- cCGCGGCcGC-GGCgGAGGGCGcCcUCu -3'
miRNA:   3'- -GCGCCGaCGaCUGgUUCCUGCuGuAG- -5'
29397 5' -56.1 NC_006151.1 + 6087 0.7 0.686685
Target:  5'- gCGgGGCUGCUGcugcugcuggGCCGaaggaggacGGGGCGGCcUCg -3'
miRNA:   3'- -GCgCCGACGAC----------UGGU---------UCCUGCUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 6131 0.67 0.845643
Target:  5'- nCGUGGCUccgGCcgcGGCCGcgAGGACGGCGg- -3'
miRNA:   3'- -GCGCCGA---CGa--CUGGU--UCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 10224 0.7 0.686685
Target:  5'- gGCGGCUGCgGACgCGgaggGGGGCGAgGg- -3'
miRNA:   3'- gCGCCGACGaCUG-GU----UCCUGCUgUag -5'
29397 5' -56.1 NC_006151.1 + 15445 0.8 0.204326
Target:  5'- cCGCGGCUcGgUGugCGAGGACGACGg- -3'
miRNA:   3'- -GCGCCGA-CgACugGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 17413 0.69 0.726966
Target:  5'- gCGCGGCaGCagGGCCAgcgagccgGGGGCGAUcUCc -3'
miRNA:   3'- -GCGCCGaCGa-CUGGU--------UCCUGCUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 17912 0.73 0.507773
Target:  5'- gCGCGGCggcGCUGAUCGcgacgcccaucaggcAGcGGCGGCGUCu -3'
miRNA:   3'- -GCGCCGa--CGACUGGU---------------UC-CUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 19445 0.67 0.820553
Target:  5'- gGCGGCUcgcGCUGgagccgcggcACCucGGGCGGCAg- -3'
miRNA:   3'- gCGCCGA---CGAC----------UGGuuCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 20501 0.78 0.29386
Target:  5'- gGCGGCUcugGCUcGAUCGGGGGCGGCGUg -3'
miRNA:   3'- gCGCCGA---CGA-CUGGUUCCUGCUGUAg -5'
29397 5' -56.1 NC_006151.1 + 21364 0.68 0.802945
Target:  5'- cCGCgGGCUGC-GGCCAcccgcuGGGcACGACGg- -3'
miRNA:   3'- -GCG-CCGACGaCUGGU------UCC-UGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 21440 0.67 0.829101
Target:  5'- uCGCGGCguggGgUGGCCcccGGcGGCGugGUCc -3'
miRNA:   3'- -GCGCCGa---CgACUGGu--UC-CUGCugUAG- -5'
29397 5' -56.1 NC_006151.1 + 21681 0.66 0.883449
Target:  5'- gGgGGCUGCUGGu--AGaACGGCGUCa -3'
miRNA:   3'- gCgCCGACGACUgguUCcUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 22203 0.66 0.883449
Target:  5'- cCGCGGg-GCcGACgAAGGGCGAggggacCGUCg -3'
miRNA:   3'- -GCGCCgaCGaCUGgUUCCUGCU------GUAG- -5'
29397 5' -56.1 NC_006151.1 + 26353 0.72 0.543437
Target:  5'- gGCGGCgGCgGGCCGcgucGGGGCGcGCGUCc -3'
miRNA:   3'- gCGCCGaCGaCUGGU----UCCUGC-UGUAG- -5'
29397 5' -56.1 NC_006151.1 + 27332 0.68 0.802945
Target:  5'- gGgGGCUGCUccccggGACCGGGGuCGugGg- -3'
miRNA:   3'- gCgCCGACGA------CUGGUUCCuGCugUag -5'
29397 5' -56.1 NC_006151.1 + 29593 0.7 0.655959
Target:  5'- gGCGGCUGC-GGCCGcGG-CGGCGg- -3'
miRNA:   3'- gCGCCGACGaCUGGUuCCuGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.