miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 5' -56.1 NC_006151.1 + 120532 1.1 0.002064
Target:  5'- gCGCGGCUGCUGACCAAGGACGACAUCg -3'
miRNA:   3'- -GCGCCGACGACUGGUUCCUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 117298 0.81 0.194354
Target:  5'- gCGCGaGCUGCUcGgcgcucgccacGCCGAGGGCGGCGUCg -3'
miRNA:   3'- -GCGC-CGACGA-C-----------UGGUUCCUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 15445 0.8 0.204326
Target:  5'- cCGCGGCUcGgUGugCGAGGACGACGg- -3'
miRNA:   3'- -GCGCCGA-CgACugGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 81394 0.79 0.231205
Target:  5'- cCGCGGCgcccagGUUGGCCAGGGugG-CGUCc -3'
miRNA:   3'- -GCGCCGa-----CGACUGGUUCCugCuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 33013 0.78 0.273124
Target:  5'- uGuCGGCUGUuggccguUGGCCGAGGACGACGg- -3'
miRNA:   3'- gC-GCCGACG-------ACUGGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 20501 0.78 0.29386
Target:  5'- gGCGGCUcugGCUcGAUCGGGGGCGGCGUg -3'
miRNA:   3'- gCGCCGA---CGA-CUGGUUCCUGCUGUAg -5'
29397 5' -56.1 NC_006151.1 + 85246 0.77 0.329852
Target:  5'- aGCcaGGC-GCUGGCCGAGGGCGggcGCAUCu -3'
miRNA:   3'- gCG--CCGaCGACUGGUUCCUGC---UGUAG- -5'
29397 5' -56.1 NC_006151.1 + 112506 0.77 0.337429
Target:  5'- cCGC-GCUGCUGACCAAGaACGACGc- -3'
miRNA:   3'- -GCGcCGACGACUGGUUCcUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 137099 0.75 0.393958
Target:  5'- uCGCGG-UGCUGGCCGGGGACGcCu-- -3'
miRNA:   3'- -GCGCCgACGACUGGUUCCUGCuGuag -5'
29397 5' -56.1 NC_006151.1 + 66795 0.75 0.411199
Target:  5'- gGCGGCgGCgggGcCCGGGGACGACGa- -3'
miRNA:   3'- gCGCCGaCGa--CuGGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 89102 0.75 0.419993
Target:  5'- cCGCGGggGCUuccugcgcgaGACCGAGGGCGGCGg- -3'
miRNA:   3'- -GCGCCgaCGA----------CUGGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 47289 0.75 0.419993
Target:  5'- cCGCGGCUGCUGugauGGGugGGCGg- -3'
miRNA:   3'- -GCGCCGACGACugguUCCugCUGUag -5'
29397 5' -56.1 NC_006151.1 + 55966 0.74 0.437917
Target:  5'- cCGCGGCUGgUGugCGAGGugcGCGAgGUg -3'
miRNA:   3'- -GCGCCGACgACugGUUCC---UGCUgUAg -5'
29397 5' -56.1 NC_006151.1 + 122312 0.73 0.488391
Target:  5'- aCGCGGCaGCUGGcggugcgcguggaccCCGAGGACGugGc- -3'
miRNA:   3'- -GCGCCGaCGACU---------------GGUUCCUGCugUag -5'
29397 5' -56.1 NC_006151.1 + 17912 0.73 0.507773
Target:  5'- gCGCGGCggcGCUGAUCGcgacgcccaucaggcAGcGGCGGCGUCu -3'
miRNA:   3'- -GCGCCGa--CGACUGGU---------------UC-CUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 37430 0.73 0.513652
Target:  5'- aGgGGCU-CUGGgaCGAGGACGACGUCc -3'
miRNA:   3'- gCgCCGAcGACUg-GUUCCUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 126394 0.73 0.52351
Target:  5'- cCGC-GCUGCUGGCCAgccgcgucGGGGCGAUg-- -3'
miRNA:   3'- -GCGcCGACGACUGGU--------UCCUGCUGuag -5'
29397 5' -56.1 NC_006151.1 + 113048 0.72 0.543437
Target:  5'- gCGCGGCgGCgGAgCgCGAGGACGACGc- -3'
miRNA:   3'- -GCGCCGaCGaCU-G-GUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 26353 0.72 0.543437
Target:  5'- gGCGGCgGCgGGCCGcgucGGGGCGcGCGUCc -3'
miRNA:   3'- gCGCCGaCGaCUGGU----UCCUGC-UGUAG- -5'
29397 5' -56.1 NC_006151.1 + 137887 0.72 0.553494
Target:  5'- uGCGGCUGCccuucuucGCCAAGGuCGACGg- -3'
miRNA:   3'- gCGCCGACGac------UGGUUCCuGCUGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.