miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29397 5' -56.1 NC_006151.1 + 104842 0.72 0.553494
Target:  5'- cCGCGGCggagGCgGACCAGGccgcGGCGACGg- -3'
miRNA:   3'- -GCGCCGa---CGaCUGGUUC----CUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 88403 0.72 0.572749
Target:  5'- cCGCGGCcGCgaGGCCcGGGACGuccgcgcGCGUCa -3'
miRNA:   3'- -GCGCCGaCGa-CUGGuUCCUGC-------UGUAG- -5'
29397 5' -56.1 NC_006151.1 + 3994 0.72 0.58397
Target:  5'- cCGCGGCcacGUUGGCCGGGGcgaagagggccGCGGCGUa -3'
miRNA:   3'- -GCGCCGa--CGACUGGUUCC-----------UGCUGUAg -5'
29397 5' -56.1 NC_006151.1 + 35971 0.72 0.594207
Target:  5'- gGCGGCcGCcgccgcGGCCGAGGAagagGGCAUCg -3'
miRNA:   3'- gCGCCGaCGa-----CUGGUUCCUg---CUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 98971 0.71 0.604473
Target:  5'- gGCGGC-GCUGGugcCCGuGGGCGAgGUCa -3'
miRNA:   3'- gCGCCGaCGACU---GGUuCCUGCUgUAG- -5'
29397 5' -56.1 NC_006151.1 + 128059 0.71 0.604473
Target:  5'- aGCGGCgGCUG-CgCGGGGGCGACc-- -3'
miRNA:   3'- gCGCCGaCGACuG-GUUCCUGCUGuag -5'
29397 5' -56.1 NC_006151.1 + 103047 0.71 0.625059
Target:  5'- uCGC-GCUGCUGGCCGAGGcGCaGGCGc- -3'
miRNA:   3'- -GCGcCGACGACUGGUUCC-UG-CUGUag -5'
29397 5' -56.1 NC_006151.1 + 95217 0.71 0.641547
Target:  5'- aGCGGCUGCgccgcacgcccucGACCGAGG-CGccCGUCg -3'
miRNA:   3'- gCGCCGACGa------------CUGGUUCCuGCu-GUAG- -5'
29397 5' -56.1 NC_006151.1 + 91132 0.71 0.645667
Target:  5'- gGCGGCgaGCuUGGCCAccugGGGGCGcgagaGCGUCa -3'
miRNA:   3'- gCGCCGa-CG-ACUGGU----UCCUGC-----UGUAG- -5'
29397 5' -56.1 NC_006151.1 + 29593 0.7 0.655959
Target:  5'- gGCGGCUGC-GGCCGcGG-CGGCGg- -3'
miRNA:   3'- gCGCCGACGaCUGGUuCCuGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 100973 0.7 0.666232
Target:  5'- -uCGGCUcCUGGCCGAGGuCGACGc- -3'
miRNA:   3'- gcGCCGAcGACUGGUUCCuGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 131872 0.7 0.672383
Target:  5'- gGCGGCgucgggucgcaggGCagcacGGCCGAGGGCGACGg- -3'
miRNA:   3'- gCGCCGa------------CGa----CUGGUUCCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 39949 0.7 0.676477
Target:  5'- cCGCuGgUGCUGACCccGGGCGcCGUCg -3'
miRNA:   3'- -GCGcCgACGACUGGuuCCUGCuGUAG- -5'
29397 5' -56.1 NC_006151.1 + 130860 0.7 0.686685
Target:  5'- gGCGGCgcggGCggGACCGcaguGGGCGGCGg- -3'
miRNA:   3'- gCGCCGa---CGa-CUGGUu---CCUGCUGUag -5'
29397 5' -56.1 NC_006151.1 + 10224 0.7 0.686685
Target:  5'- gGCGGCUGCgGACgCGgaggGGGGCGAgGg- -3'
miRNA:   3'- gCGCCGACGaCUG-GU----UCCUGCUgUag -5'
29397 5' -56.1 NC_006151.1 + 6087 0.7 0.686685
Target:  5'- gCGgGGCUGCUGcugcugcuggGCCGaaggaggacGGGGCGGCcUCg -3'
miRNA:   3'- -GCgCCGACGAC----------UGGU---------UCCUGCUGuAG- -5'
29397 5' -56.1 NC_006151.1 + 102508 0.7 0.696847
Target:  5'- cCGCGGC-GCggGACCcc-GGCGGCGUCu -3'
miRNA:   3'- -GCGCCGaCGa-CUGGuucCUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 131930 0.7 0.706954
Target:  5'- cCGCGGUgcugccguaGCUGGCCAcGGGCGAgGg- -3'
miRNA:   3'- -GCGCCGa--------CGACUGGUuCCUGCUgUag -5'
29397 5' -56.1 NC_006151.1 + 96654 0.7 0.706954
Target:  5'- gGCGGCgag-GGCCc-GGGCGACGUCc -3'
miRNA:   3'- gCGCCGacgaCUGGuuCCUGCUGUAG- -5'
29397 5' -56.1 NC_006151.1 + 118449 0.69 0.716997
Target:  5'- gCGCGGCUcgGcCUGGCCGcGGACGcGCAc- -3'
miRNA:   3'- -GCGCCGA--C-GACUGGUuCCUGC-UGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.