Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 130472 | 0.67 | 0.751478 |
Target: 5'- uGCaGGGCgauggCCUGCc---GCAGCGCg -3' miRNA: 3'- gCGaCCCGaa---GGACGacuuCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 102688 | 0.67 | 0.751478 |
Target: 5'- aCGCggGGGCgcCCgGCgcGGGCGGCGCg -3' miRNA: 3'- -GCGa-CCCGaaGGaCGacUUCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 107009 | 0.67 | 0.741635 |
Target: 5'- aGCUGGaGCggcUCUcggcGCUGAucGCGGCGCg -3' miRNA: 3'- gCGACC-CGa--AGGa---CGACUu-CGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 17997 | 0.67 | 0.727691 |
Target: 5'- uCGCUGGGCgucucguugucgcUCUcGCUGuAGUAGCAg -3' miRNA: 3'- -GCGACCCGa------------AGGaCGACuUCGUCGUg -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 49179 | 0.68 | 0.725685 |
Target: 5'- cCGCgGGGUgcugCUGCUGAAcacgacgcugaccguGCGGCGCg -3' miRNA: 3'- -GCGaCCCGaag-GACGACUU---------------CGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 56326 | 0.68 | 0.721662 |
Target: 5'- aGcCUGGGCcggugGCUGGAGCGcGCGCg -3' miRNA: 3'- gC-GACCCGaaggaCGACUUCGU-CGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 20130 | 0.68 | 0.721662 |
Target: 5'- gGCUgggGGGCgggcgCC-GCgGggGCGGCGCg -3' miRNA: 3'- gCGA---CCCGaa---GGaCGaCuuCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 70911 | 0.68 | 0.701371 |
Target: 5'- gCGCUGccuGGCgcgCgUGCUGgcGCuGCACg -3' miRNA: 3'- -GCGAC---CCGaa-GgACGACuuCGuCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 21381 | 0.68 | 0.680839 |
Target: 5'- cCGCUGGGCacgacggCCggcgggGCgaaGggGCGGUGCg -3' miRNA: 3'- -GCGACCCGaa-----GGa-----CGa--CuuCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 4995 | 0.68 | 0.680839 |
Target: 5'- aGC-GGcGCUUCCUGCgcgGggGCcgGGCGg -3' miRNA: 3'- gCGaCC-CGAAGGACGa--CuuCG--UCGUg -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 121061 | 0.69 | 0.670506 |
Target: 5'- gCGCgUGGGCUUCacgUGCUcgcaGAcgggcGGCGGCGCc -3' miRNA: 3'- -GCG-ACCCGAAGg--ACGA----CU-----UCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 60801 | 0.69 | 0.670506 |
Target: 5'- aCGCUGGGCUcgCCgcgcaGCUccacGAGCAGCu- -3' miRNA: 3'- -GCGACCCGAa-GGa----CGAc---UUCGUCGug -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 78738 | 0.69 | 0.639348 |
Target: 5'- gCGCUGcGGCccacgUCCgccgucUGCgccGAGGCGGCGCu -3' miRNA: 3'- -GCGAC-CCGa----AGG------ACGa--CUUCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 734 | 0.69 | 0.639348 |
Target: 5'- gGCggGGGCUUCC-GCUcc-GCGGCGCc -3' miRNA: 3'- gCGa-CCCGAAGGaCGAcuuCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 117055 | 0.69 | 0.618533 |
Target: 5'- aGCUGGGCaggUCgUGgUcGAGCAGCAg -3' miRNA: 3'- gCGACCCGa--AGgACgAcUUCGUCGUg -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 113336 | 0.7 | 0.59776 |
Target: 5'- uGCUGGcGCUggC-GCUGAAGCAcguGCGCg -3' miRNA: 3'- gCGACC-CGAagGaCGACUUCGU---CGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 123036 | 0.7 | 0.587409 |
Target: 5'- gGCgUGGGCggaCCUGCcgGccGCGGCGCu -3' miRNA: 3'- gCG-ACCCGaa-GGACGa-CuuCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 73770 | 0.71 | 0.516266 |
Target: 5'- aCGCaGGGCa-CgUGCUGGgcGGCGGCGCg -3' miRNA: 3'- -GCGaCCCGaaGgACGACU--UCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 11149 | 0.72 | 0.477173 |
Target: 5'- cCGCUGcGGUUUCCc-CUGgcGCGGCGCc -3' miRNA: 3'- -GCGAC-CCGAAGGacGACuuCGUCGUG- -5' |
|||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 66080 | 0.74 | 0.378144 |
Target: 5'- cCGcCUGGGCUUCCacGCgGGccuGCAGCGCg -3' miRNA: 3'- -GC-GACCCGAAGGa-CGaCUu--CGUCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home