Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 3' | -57.1 | NC_006151.1 | + | 49179 | 0.68 | 0.725685 |
Target: 5'- cCGCgGGGUgcugCUGCUGAAcacgacgcugaccguGCGGCGCg -3' miRNA: 3'- -GCGaCCCGaag-GACGACUU---------------CGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 17997 | 0.67 | 0.727691 |
Target: 5'- uCGCUGGGCgucucguugucgcUCUcGCUGuAGUAGCAg -3' miRNA: 3'- -GCGACCCGa------------AGGaCGACuUCGUCGUg -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 107009 | 0.67 | 0.741635 |
Target: 5'- aGCUGGaGCggcUCUcggcGCUGAucGCGGCGCg -3' miRNA: 3'- gCGACC-CGa--AGGa---CGACUu-CGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 130472 | 0.67 | 0.751478 |
Target: 5'- uGCaGGGCgauggCCUGCc---GCAGCGCg -3' miRNA: 3'- gCGaCCCGaa---GGACGacuuCGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 102688 | 0.67 | 0.751478 |
Target: 5'- aCGCggGGGCgcCCgGCgcGGGCGGCGCg -3' miRNA: 3'- -GCGa-CCCGaaGGaCGacUUCGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 92048 | 0.67 | 0.761213 |
Target: 5'- cCGCUGccuGCUgcgCCUGCUGcgcauGCuGCACa -3' miRNA: 3'- -GCGACc--CGAa--GGACGACuu---CGuCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 30753 | 0.67 | 0.761213 |
Target: 5'- cCGC-GGGCggg--GCgGggGCAGCACu -3' miRNA: 3'- -GCGaCCCGaaggaCGaCuuCGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 112587 | 0.67 | 0.770829 |
Target: 5'- cCGC-GGGCUUCgUGgaGGccgccGCGGCGCc -3' miRNA: 3'- -GCGaCCCGAAGgACgaCUu----CGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 137014 | 0.67 | 0.770829 |
Target: 5'- gCGCUGGGCgcCCUGCUcGGccuGcCGGaCGCg -3' miRNA: 3'- -GCGACCCGaaGGACGA-CUu--C-GUC-GUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 116792 | 0.67 | 0.770829 |
Target: 5'- cCGCUGGGUggCgaGCgaguaGAGCAGaCACg -3' miRNA: 3'- -GCGACCCGaaGgaCGac---UUCGUC-GUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 97606 | 0.67 | 0.770829 |
Target: 5'- aCGC-GGGCacgugcaCCUGC--GAGCGGCGCg -3' miRNA: 3'- -GCGaCCCGaa-----GGACGacUUCGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 85529 | 0.67 | 0.770829 |
Target: 5'- ---cGGGCcUgCUGCUGcuGCGGCGCc -3' miRNA: 3'- gcgaCCCGaAgGACGACuuCGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 84693 | 0.67 | 0.770829 |
Target: 5'- aGCUGcGGCc----GCUGGAGCGGCAg -3' miRNA: 3'- gCGAC-CCGaaggaCGACUUCGUCGUg -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 93762 | 0.67 | 0.770829 |
Target: 5'- gCGCgGGGCgUCCcccagguaguUGUUGuagauGCAGCACg -3' miRNA: 3'- -GCGaCCCGaAGG----------ACGACuu---CGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 81654 | 0.67 | 0.780317 |
Target: 5'- uCGaaGGGCUUCCcccGCacGGAGCGGCGg -3' miRNA: 3'- -GCgaCCCGAAGGa--CGa-CUUCGUCGUg -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 27001 | 0.67 | 0.780317 |
Target: 5'- uGCUcGGGCgaga-GCUGGAGCAGgGCc -3' miRNA: 3'- gCGA-CCCGaaggaCGACUUCGUCgUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 115737 | 0.66 | 0.796127 |
Target: 5'- aGUUGcacaccaccuugauGGCcgCCUGCUGcuguccAGCAGCACg -3' miRNA: 3'- gCGAC--------------CCGaaGGACGACu-----UCGUCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 46591 | 0.66 | 0.816803 |
Target: 5'- ---cGGGCggCCgUGCUGAGGCgcgAGCAg -3' miRNA: 3'- gcgaCCCGaaGG-ACGACUUCG---UCGUg -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 12759 | 0.66 | 0.825512 |
Target: 5'- gCGgaGGGCUg---GCUcGAGGCcAGCGCg -3' miRNA: 3'- -GCgaCCCGAaggaCGA-CUUCG-UCGUG- -5' |
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29398 | 3' | -57.1 | NC_006151.1 | + | 2327 | 0.66 | 0.825512 |
Target: 5'- aGCgGGGCggCCUcggcgucggGCUccAGCAGCGCc -3' miRNA: 3'- gCGaCCCGaaGGA---------CGAcuUCGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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