miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 3' -57.1 NC_006151.1 + 120412 1.09 0.001702
Target:  5'- cCGCUGGGCUUCCUGCUGAAGCAGCACc -3'
miRNA:   3'- -GCGACCCGAAGGACGACUUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 103722 0.84 0.083303
Target:  5'- aGCUGGGCUUCCUggagccGCUGgcGCGGCAg -3'
miRNA:   3'- gCGACCCGAAGGA------CGACuuCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 85192 0.8 0.153584
Target:  5'- cCGCUGGGCaucgcggaCCUGCUGGAGCGGguCc -3'
miRNA:   3'- -GCGACCCGaa------GGACGACUUCGUCguG- -5'
29398 3' -57.1 NC_006151.1 + 85933 0.78 0.214066
Target:  5'- gGCUGGGCcUgCUGCUGcAGCAGcCGCa -3'
miRNA:   3'- gCGACCCGaAgGACGACuUCGUC-GUG- -5'
29398 3' -57.1 NC_006151.1 + 89102 0.76 0.287001
Target:  5'- cCGCggGGGCUUCCUGCgcgaGAccgagGGCGGCGg -3'
miRNA:   3'- -GCGa-CCCGAAGGACGa---CU-----UCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 66080 0.74 0.378144
Target:  5'- cCGcCUGGGCUUCCacGCgGGccuGCAGCGCg -3'
miRNA:   3'- -GC-GACCCGAAGGa-CGaCUu--CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 11149 0.72 0.477173
Target:  5'- cCGCUGcGGUUUCCc-CUGgcGCGGCGCc -3'
miRNA:   3'- -GCGAC-CCGAAGGacGACuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 73770 0.71 0.516266
Target:  5'- aCGCaGGGCa-CgUGCUGGgcGGCGGCGCg -3'
miRNA:   3'- -GCGaCCCGaaGgACGACU--UCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 123036 0.7 0.587409
Target:  5'- gGCgUGGGCggaCCUGCcgGccGCGGCGCu -3'
miRNA:   3'- gCG-ACCCGaa-GGACGa-CuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 113336 0.7 0.59776
Target:  5'- uGCUGGcGCUggC-GCUGAAGCAcguGCGCg -3'
miRNA:   3'- gCGACC-CGAagGaCGACUUCGU---CGUG- -5'
29398 3' -57.1 NC_006151.1 + 117055 0.69 0.618533
Target:  5'- aGCUGGGCaggUCgUGgUcGAGCAGCAg -3'
miRNA:   3'- gCGACCCGa--AGgACgAcUUCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 734 0.69 0.639348
Target:  5'- gGCggGGGCUUCC-GCUcc-GCGGCGCc -3'
miRNA:   3'- gCGa-CCCGAAGGaCGAcuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 78738 0.69 0.639348
Target:  5'- gCGCUGcGGCccacgUCCgccgucUGCgccGAGGCGGCGCu -3'
miRNA:   3'- -GCGAC-CCGa----AGG------ACGa--CUUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 121061 0.69 0.670506
Target:  5'- gCGCgUGGGCUUCacgUGCUcgcaGAcgggcGGCGGCGCc -3'
miRNA:   3'- -GCG-ACCCGAAGg--ACGA----CU-----UCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 60801 0.69 0.670506
Target:  5'- aCGCUGGGCUcgCCgcgcaGCUccacGAGCAGCu- -3'
miRNA:   3'- -GCGACCCGAa-GGa----CGAc---UUCGUCGug -5'
29398 3' -57.1 NC_006151.1 + 4995 0.68 0.680839
Target:  5'- aGC-GGcGCUUCCUGCgcgGggGCcgGGCGg -3'
miRNA:   3'- gCGaCC-CGAAGGACGa--CuuCG--UCGUg -5'
29398 3' -57.1 NC_006151.1 + 21381 0.68 0.680839
Target:  5'- cCGCUGGGCacgacggCCggcgggGCgaaGggGCGGUGCg -3'
miRNA:   3'- -GCGACCCGaa-----GGa-----CGa--CuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 70911 0.68 0.701371
Target:  5'- gCGCUGccuGGCgcgCgUGCUGgcGCuGCACg -3'
miRNA:   3'- -GCGAC---CCGaa-GgACGACuuCGuCGUG- -5'
29398 3' -57.1 NC_006151.1 + 20130 0.68 0.721662
Target:  5'- gGCUgggGGGCgggcgCC-GCgGggGCGGCGCg -3'
miRNA:   3'- gCGA---CCCGaa---GGaCGaCuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 56326 0.68 0.721662
Target:  5'- aGcCUGGGCcggugGCUGGAGCGcGCGCg -3'
miRNA:   3'- gC-GACCCGaaggaCGACUUCGU-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.