miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 3' -57.1 NC_006151.1 + 734 0.69 0.639348
Target:  5'- gGCggGGGCUUCC-GCUcc-GCGGCGCc -3'
miRNA:   3'- gCGa-CCCGAAGGaCGAcuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 2327 0.66 0.825512
Target:  5'- aGCgGGGCggCCUcggcgucggGCUccAGCAGCGCc -3'
miRNA:   3'- gCGaCCCGaaGGA---------CGAcuUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 4314 0.66 0.83404
Target:  5'- uCGCgGGGCacgcggCCggGCUGcgcggcggcgaAGGCGGCGCg -3'
miRNA:   3'- -GCGaCCCGaa----GGa-CGAC-----------UUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 4995 0.68 0.680839
Target:  5'- aGC-GGcGCUUCCUGCgcgGggGCcgGGCGg -3'
miRNA:   3'- gCGaCC-CGAAGGACGa--CuuCG--UCGUg -5'
29398 3' -57.1 NC_006151.1 + 11149 0.72 0.477173
Target:  5'- cCGCUGcGGUUUCCc-CUGgcGCGGCGCc -3'
miRNA:   3'- -GCGAC-CCGAAGGacGACuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 12759 0.66 0.825512
Target:  5'- gCGgaGGGCUg---GCUcGAGGCcAGCGCg -3'
miRNA:   3'- -GCgaCCCGAaggaCGA-CUUCG-UCGUG- -5'
29398 3' -57.1 NC_006151.1 + 17997 0.67 0.727691
Target:  5'- uCGCUGGGCgucucguugucgcUCUcGCUGuAGUAGCAg -3'
miRNA:   3'- -GCGACCCGa------------AGGaCGACuUCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 20130 0.68 0.721662
Target:  5'- gGCUgggGGGCgggcgCC-GCgGggGCGGCGCg -3'
miRNA:   3'- gCGA---CCCGaa---GGaCGaCuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 21381 0.68 0.680839
Target:  5'- cCGCUGGGCacgacggCCggcgggGCgaaGggGCGGUGCg -3'
miRNA:   3'- -GCGACCCGaa-----GGa-----CGa--CuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 27001 0.67 0.780317
Target:  5'- uGCUcGGGCgaga-GCUGGAGCAGgGCc -3'
miRNA:   3'- gCGA-CCCGaaggaCGACUUCGUCgUG- -5'
29398 3' -57.1 NC_006151.1 + 30753 0.67 0.761213
Target:  5'- cCGC-GGGCggg--GCgGggGCAGCACu -3'
miRNA:   3'- -GCGaCCCGaaggaCGaCuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 46591 0.66 0.816803
Target:  5'- ---cGGGCggCCgUGCUGAGGCgcgAGCAg -3'
miRNA:   3'- gcgaCCCGaaGG-ACGACUUCG---UCGUg -5'
29398 3' -57.1 NC_006151.1 + 49179 0.68 0.725685
Target:  5'- cCGCgGGGUgcugCUGCUGAAcacgacgcugaccguGCGGCGCg -3'
miRNA:   3'- -GCGaCCCGaag-GACGACUU---------------CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 49846 0.66 0.83404
Target:  5'- gGCggcGGGC--CCgcGCUGGGcGCAGCACg -3'
miRNA:   3'- gCGa--CCCGaaGGa-CGACUU-CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 56326 0.68 0.721662
Target:  5'- aGcCUGGGCcggugGCUGGAGCGcGCGCg -3'
miRNA:   3'- gC-GACCCGaaggaCGACUUCGU-CGUG- -5'
29398 3' -57.1 NC_006151.1 + 57286 0.66 0.83404
Target:  5'- aGCaGGGCgUCCaGCgcgGccuuGGCGGCGCg -3'
miRNA:   3'- gCGaCCCGaAGGaCGa--Cu---UCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 60801 0.69 0.670506
Target:  5'- aCGCUGGGCUcgCCgcgcaGCUccacGAGCAGCu- -3'
miRNA:   3'- -GCGACCCGAa-GGa----CGAc---UUCGUCGug -5'
29398 3' -57.1 NC_006151.1 + 66080 0.74 0.378144
Target:  5'- cCGcCUGGGCUUCCacGCgGGccuGCAGCGCg -3'
miRNA:   3'- -GC-GACCCGAAGGa-CGaCUu--CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 70911 0.68 0.701371
Target:  5'- gCGCUGccuGGCgcgCgUGCUGgcGCuGCACg -3'
miRNA:   3'- -GCGAC---CCGaa-GgACGACuuCGuCGUG- -5'
29398 3' -57.1 NC_006151.1 + 73770 0.71 0.516266
Target:  5'- aCGCaGGGCa-CgUGCUGGgcGGCGGCGCg -3'
miRNA:   3'- -GCGaCCCGaaGgACGACU--UCGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.