miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 3' -57.1 NC_006151.1 + 141616 0.66 0.83404
Target:  5'- gGCUgccgggaucGGGCgggUCgCUGCcGcGGCGGCGCg -3'
miRNA:   3'- gCGA---------CCCGa--AG-GACGaCuUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 137014 0.67 0.770829
Target:  5'- gCGCUGGGCgcCCUGCUcGGccuGcCGGaCGCg -3'
miRNA:   3'- -GCGACCCGaaGGACGA-CUu--C-GUC-GUG- -5'
29398 3' -57.1 NC_006151.1 + 130472 0.67 0.751478
Target:  5'- uGCaGGGCgauggCCUGCc---GCAGCGCg -3'
miRNA:   3'- gCGaCCCGaa---GGACGacuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 123036 0.7 0.587409
Target:  5'- gGCgUGGGCggaCCUGCcgGccGCGGCGCu -3'
miRNA:   3'- gCG-ACCCGaa-GGACGa-CuuCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 121061 0.69 0.670506
Target:  5'- gCGCgUGGGCUUCacgUGCUcgcaGAcgggcGGCGGCGCc -3'
miRNA:   3'- -GCG-ACCCGAAGg--ACGA----CU-----UCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 120412 1.09 0.001702
Target:  5'- cCGCUGGGCUUCCUGCUGAAGCAGCACc -3'
miRNA:   3'- -GCGACCCGAAGGACGACUUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 117055 0.69 0.618533
Target:  5'- aGCUGGGCaggUCgUGgUcGAGCAGCAg -3'
miRNA:   3'- gCGACCCGa--AGgACgAcUUCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 116792 0.67 0.770829
Target:  5'- cCGCUGGGUggCgaGCgaguaGAGCAGaCACg -3'
miRNA:   3'- -GCGACCCGaaGgaCGac---UUCGUC-GUG- -5'
29398 3' -57.1 NC_006151.1 + 115737 0.66 0.796127
Target:  5'- aGUUGcacaccaccuugauGGCcgCCUGCUGcuguccAGCAGCACg -3'
miRNA:   3'- gCGAC--------------CCGaaGGACGACu-----UCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 114437 0.66 0.83404
Target:  5'- uGCUGGaCcgCCUGCUcGggGCcuGCGCc -3'
miRNA:   3'- gCGACCcGaaGGACGA-CuuCGu-CGUG- -5'
29398 3' -57.1 NC_006151.1 + 113336 0.7 0.59776
Target:  5'- uGCUGGcGCUggC-GCUGAAGCAcguGCGCg -3'
miRNA:   3'- gCGACC-CGAagGaCGACUUCGU---CGUG- -5'
29398 3' -57.1 NC_006151.1 + 112587 0.67 0.770829
Target:  5'- cCGC-GGGCUUCgUGgaGGccgccGCGGCGCc -3'
miRNA:   3'- -GCGaCCCGAAGgACgaCUu----CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 107009 0.67 0.741635
Target:  5'- aGCUGGaGCggcUCUcggcGCUGAucGCGGCGCg -3'
miRNA:   3'- gCGACC-CGa--AGGa---CGACUu-CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 103722 0.84 0.083303
Target:  5'- aGCUGGGCUUCCUggagccGCUGgcGCGGCAg -3'
miRNA:   3'- gCGACCCGAAGGA------CGACuuCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 102688 0.67 0.751478
Target:  5'- aCGCggGGGCgcCCgGCgcGGGCGGCGCg -3'
miRNA:   3'- -GCGa-CCCGaaGGaCGacUUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 97606 0.67 0.770829
Target:  5'- aCGC-GGGCacgugcaCCUGC--GAGCGGCGCg -3'
miRNA:   3'- -GCGaCCCGaa-----GGACGacUUCGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 93762 0.67 0.770829
Target:  5'- gCGCgGGGCgUCCcccagguaguUGUUGuagauGCAGCACg -3'
miRNA:   3'- -GCGaCCCGaAGG----------ACGACuu---CGUCGUG- -5'
29398 3' -57.1 NC_006151.1 + 92048 0.67 0.761213
Target:  5'- cCGCUGccuGCUgcgCCUGCUGcgcauGCuGCACa -3'
miRNA:   3'- -GCGACc--CGAa--GGACGACuu---CGuCGUG- -5'
29398 3' -57.1 NC_006151.1 + 89102 0.76 0.287001
Target:  5'- cCGCggGGGCUUCCUGCgcgaGAccgagGGCGGCGg -3'
miRNA:   3'- -GCGa-CCCGAAGGACGa---CU-----UCGUCGUg -5'
29398 3' -57.1 NC_006151.1 + 85933 0.78 0.214066
Target:  5'- gGCUGGGCcUgCUGCUGcAGCAGcCGCa -3'
miRNA:   3'- gCGACCCGaAgGACGACuUCGUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.