Results 41 - 60 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 109279 | 0.7 | 0.371634 |
Target: 5'- gCUGgccgCCCCCuccgagaucgaGCGGCccGCCGCCuCGGc -3' miRNA: 3'- -GACaa--GGGGG-----------CGCCGuuCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 69636 | 0.7 | 0.379433 |
Target: 5'- -cGgcgUCCCgCGCGuGCGGcGCCGCCgGGu -3' miRNA: 3'- gaCa--AGGGgGCGC-CGUU-CGGCGGgCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 31603 | 0.7 | 0.379433 |
Target: 5'- -cGcUCCCCCGCcgccugGGCGGggauGCCGCgCCGGc -3' miRNA: 3'- gaCaAGGGGGCG------CCGUU----CGGCG-GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 106559 | 0.7 | 0.380219 |
Target: 5'- aUGUgcaucCCCCCGCGGCugcucucggcgcuguGGuCCGCCCu- -3' miRNA: 3'- gACAa----GGGGGCGCCGu--------------UC-GGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 125245 | 0.7 | 0.38734 |
Target: 5'- -cGcUCCCCCGgccCGGCGGGgaCGCCCGa -3' miRNA: 3'- gaCaAGGGGGC---GCCGUUCg-GCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 87083 | 0.7 | 0.38734 |
Target: 5'- ----cCCCCCGCGaGCGAccucGCCGCCgUGGu -3' miRNA: 3'- gacaaGGGGGCGC-CGUU----CGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 117164 | 0.7 | 0.395356 |
Target: 5'- gCUGUUgCUCgagaCGCGGUAgaagGGCCGCCgGGg -3' miRNA: 3'- -GACAAgGGG----GCGCCGU----UCGGCGGgCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 15237 | 0.7 | 0.40103 |
Target: 5'- -cGgcCCCCUGCuGGCAGGCCcugcuccagcucucGCCCGa -3' miRNA: 3'- gaCaaGGGGGCG-CCGUUCGG--------------CGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 114105 | 0.7 | 0.403477 |
Target: 5'- cCUGggCCUCgGCGGCu-GCUGCCCc- -3' miRNA: 3'- -GACaaGGGGgCGCCGuuCGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 132827 | 0.7 | 0.409225 |
Target: 5'- gCUGgcCgCCCGCGGgAcggccaccacgggcGGCCGgCCCGGg -3' miRNA: 3'- -GACaaGgGGGCGCCgU--------------UCGGC-GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 38339 | 0.7 | 0.411704 |
Target: 5'- cCUG--CCCCCGCucuGGCccGAGCaGCCCGGc -3' miRNA: 3'- -GACaaGGGGGCG---CCG--UUCGgCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 108295 | 0.69 | 0.419196 |
Target: 5'- -cGUcugCCCCgGCGGCGAcccccacGCCccccgcGCCCGGg -3' miRNA: 3'- gaCAa--GGGGgCGCCGUU-------CGG------CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 116517 | 0.69 | 0.420033 |
Target: 5'- gCUGUUCUggCCCGCGucguagacGCGgaacuGGCCGCCgCGGu -3' miRNA: 3'- -GACAAGG--GGGCGC--------CGU-----UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107703 | 0.69 | 0.420033 |
Target: 5'- ----gCCCgCCGcCGGCAccaaGGCCGCCgCGGc -3' miRNA: 3'- gacaaGGG-GGC-GCCGU----UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 87456 | 0.69 | 0.423394 |
Target: 5'- -cGgccgCCCCCgcuccggcuccagcaGCGGC-AGCCGCCgCGGc -3' miRNA: 3'- gaCaa--GGGGG---------------CGCCGuUCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 61431 | 0.69 | 0.428464 |
Target: 5'- -cGgcCCCgCCGCGGCGc-CCGCCCGc -3' miRNA: 3'- gaCaaGGG-GGCGCCGUucGGCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 29077 | 0.69 | 0.44562 |
Target: 5'- -cGggCCCCgagacggcCGCGGCGA-CCGuCCCGGa -3' miRNA: 3'- gaCaaGGGG--------GCGCCGUUcGGC-GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 36610 | 0.69 | 0.454341 |
Target: 5'- ---cUCCCCCGCcGcCGGGCCggucucggcGCCCGGc -3' miRNA: 3'- gacaAGGGGGCGcC-GUUCGG---------CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 34506 | 0.69 | 0.463154 |
Target: 5'- -gGUUCUCCCGCcccGGCGucGCUuCCCGGu -3' miRNA: 3'- gaCAAGGGGGCG---CCGUu-CGGcGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 9481 | 0.69 | 0.463154 |
Target: 5'- -cGgcCCCCCGCGGCc-GCgGCgUGGg -3' miRNA: 3'- gaCaaGGGGGCGCCGuuCGgCGgGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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