Results 21 - 40 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 65773 | 0.72 | 0.286146 |
Target: 5'- -cGUcgCCgCCgGCGGCGGcgauggcGCCGCCCGGc -3' miRNA: 3'- gaCAa-GG-GGgCGCCGUU-------CGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 139593 | 0.72 | 0.286784 |
Target: 5'- -cGcgCCCCCccgaGCGGCGGcCCGUCCGGg -3' miRNA: 3'- gaCaaGGGGG----CGCCGUUcGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 2288 | 0.72 | 0.286784 |
Target: 5'- -gGggCgCCCGCGGCGGcgacGgCGCCCGGg -3' miRNA: 3'- gaCaaGgGGGCGCCGUU----CgGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 33994 | 0.72 | 0.299796 |
Target: 5'- --uUUCCCCCGgaggggcguccCGGCGcGCCGgCCCGGc -3' miRNA: 3'- gacAAGGGGGC-----------GCCGUuCGGC-GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 37341 | 0.72 | 0.299796 |
Target: 5'- gCUGcUCaCCCCGCucGGgGAGCCcugGCCCGGc -3' miRNA: 3'- -GACaAG-GGGGCG--CCgUUCGG---CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 81242 | 0.72 | 0.299796 |
Target: 5'- gCUGgcgCCCCCGCgcaggggcagGGCGAGCagCGCCuCGGc -3' miRNA: 3'- -GACaa-GGGGGCG----------CCGUUCG--GCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 50429 | 0.72 | 0.299796 |
Target: 5'- -gGcgCCCCUGCGcGCcGGCgGCCUGGg -3' miRNA: 3'- gaCaaGGGGGCGC-CGuUCGgCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 101998 | 0.72 | 0.305799 |
Target: 5'- -aGUUCCgCCCGCGcacccGCGAgcccaugggcuucGCCGUCCGGg -3' miRNA: 3'- gaCAAGG-GGGCGC-----CGUU-------------CGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 82647 | 0.71 | 0.320162 |
Target: 5'- ----cCCCCUGCGGCGagGGCgGCCCa- -3' miRNA: 3'- gacaaGGGGGCGCCGU--UCGgCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 86429 | 0.71 | 0.327177 |
Target: 5'- cCUGU--CCUCGCGGCGccuGgCGCCCGGc -3' miRNA: 3'- -GACAagGGGGCGCCGUu--CgGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 30942 | 0.71 | 0.334306 |
Target: 5'- ----gCCCgCGCGGUAucgcGGCgGCCCGGg -3' miRNA: 3'- gacaaGGGgGCGCCGU----UCGgCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 31019 | 0.71 | 0.334306 |
Target: 5'- -gGUcgCCgCCGCGGCccucGCgGCCCGGg -3' miRNA: 3'- gaCAa-GGgGGCGCCGuu--CGgCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 6281 | 0.71 | 0.334306 |
Target: 5'- cCUcUUCCUcggCCGCGGCGgcGGCCGCCaGGa -3' miRNA: 3'- -GAcAAGGG---GGCGCCGU--UCGGCGGgCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 108941 | 0.71 | 0.334306 |
Target: 5'- --cUUCCgCCCGCGGCucaacccgaGGGCCGuccuCCCGGa -3' miRNA: 3'- gacAAGG-GGGCGCCG---------UUCGGC----GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107601 | 0.71 | 0.341547 |
Target: 5'- gCUGg--CCCCGcCGGCGccGCCGCCCGc -3' miRNA: 3'- -GACaagGGGGC-GCCGUu-CGGCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 69125 | 0.71 | 0.348901 |
Target: 5'- -cGcgCCUCCGCgGGCAGGgCGCgCGGg -3' miRNA: 3'- gaCaaGGGGGCG-CCGUUCgGCGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 106092 | 0.71 | 0.348901 |
Target: 5'- aCUGggaCUCgGCGGCcaAGGCCGCCgCGGa -3' miRNA: 3'- -GACaagGGGgCGCCG--UUCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 44023 | 0.71 | 0.348901 |
Target: 5'- -----gCCCCGCGGgGAGCCGgCCGu -3' miRNA: 3'- gacaagGGGGCGCCgUUCGGCgGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 84537 | 0.71 | 0.356368 |
Target: 5'- -cGUUCCCCgUG-GGCuucuGGGcCCGCCCGGg -3' miRNA: 3'- gaCAAGGGG-GCgCCG----UUC-GGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 109279 | 0.7 | 0.371634 |
Target: 5'- gCUGgccgCCCCCuccgagaucgaGCGGCccGCCGCCuCGGc -3' miRNA: 3'- -GACaa--GGGGG-----------CGCCGuuCGGCGG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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