miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 142280 0.66 0.623351
Target:  5'- ----gUCCCgGCGGCcAGaCCGgCCGGg -3'
miRNA:   3'- gacaaGGGGgCGCCGuUC-GGCgGGCC- -5'
29398 5' -62.7 NC_006151.1 + 53978 0.66 0.6136
Target:  5'- -gGcgCCUCCgcgggcgucGCGGCGAGCU-CCCGGa -3'
miRNA:   3'- gaCaaGGGGG---------CGCCGUUCGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 56493 0.66 0.6136
Target:  5'- gCUGUcggcCCCCCG-GGCc--CCGCCCGu -3'
miRNA:   3'- -GACAa---GGGGGCgCCGuucGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 77889 0.66 0.6136
Target:  5'- gUGcgCCCCCcgcucaGCGGCGAgacGCgGCCCa- -3'
miRNA:   3'- gACaaGGGGG------CGCCGUU---CGgCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 118211 0.66 0.6136
Target:  5'- -cGUggCCgUgGUGGCGGG-CGCCCGGa -3'
miRNA:   3'- gaCAa-GGgGgCGCCGUUCgGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 27336 0.66 0.603862
Target:  5'- gCUGcUCCCCgggacCGgGGUcguGGGCCgggGCCCGGg -3'
miRNA:   3'- -GACaAGGGG-----GCgCCG---UUCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 19285 0.66 0.603862
Target:  5'- -gGggCCCaCCGgGGCcAGCgGCgCGGg -3'
miRNA:   3'- gaCaaGGG-GGCgCCGuUCGgCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 81903 0.66 0.603862
Target:  5'- -cGcgCCggUCGCGGCGcGCCGCCuCGGa -3'
miRNA:   3'- gaCaaGGg-GGCGCCGUuCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 101930 0.66 0.603862
Target:  5'- ----gCCCCCGUGGCcGGCgaGCCaGGa -3'
miRNA:   3'- gacaaGGGGGCGCCGuUCGg-CGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 4786 0.66 0.603862
Target:  5'- -cGggCCCggCCGCGGCGcgguagcgGGCCgcgGCCUGGc -3'
miRNA:   3'- gaCaaGGG--GGCGCCGU--------UCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 15902 0.66 0.603862
Target:  5'- -cGcgCCCCgaCGCGGCccgccGCCGCCCc- -3'
miRNA:   3'- gaCaaGGGG--GCGCCGuu---CGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 38525 0.66 0.603862
Target:  5'- ---cUCCCCCGCcGCcGGCCcggacccagcGCCCGa -3'
miRNA:   3'- gacaAGGGGGCGcCGuUCGG----------CGGGCc -5'
29398 5' -62.7 NC_006151.1 + 3361 0.66 0.600944
Target:  5'- -cGggCCaCCUcgggcgggcaguagGCGGCGagGGCCGCCuCGGa -3'
miRNA:   3'- gaCaaGG-GGG--------------CGCCGU--UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 12837 0.66 0.594143
Target:  5'- ----cCCCCCGCGGCcacaccGAGCCuucuccGCgCGGu -3'
miRNA:   3'- gacaaGGGGGCGCCG------UUCGG------CGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 109943 0.66 0.594143
Target:  5'- ---cUCCCCUggGCGGCcucGGCCGCgucuggcccacCCGGg -3'
miRNA:   3'- gacaAGGGGG--CGCCGu--UCGGCG-----------GGCC- -5'
29398 5' -62.7 NC_006151.1 + 24625 0.66 0.594143
Target:  5'- ---aUCCCgUGCagguaGGCGAGCCcgcggagcacgGCCCGGa -3'
miRNA:   3'- gacaAGGGgGCG-----CCGUUCGG-----------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 112582 0.66 0.593172
Target:  5'- ---cUCgCCCGCgGGCuucguggAGGCCGCCgCGGc -3'
miRNA:   3'- gacaAGgGGGCG-CCG-------UUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 109224 0.66 0.593172
Target:  5'- ---cUCCCgCCcCGGCGcagacccAGCCGCCgCGGu -3'
miRNA:   3'- gacaAGGG-GGcGCCGU-------UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 107043 0.66 0.58445
Target:  5'- ----gCCCCUGgcCGGCGAGCCgGCCUGc -3'
miRNA:   3'- gacaaGGGGGC--GCCGUUCGG-CGGGCc -5'
29398 5' -62.7 NC_006151.1 + 45264 0.66 0.58445
Target:  5'- cCUGUcccagUCCCCCgucggggugaGCGGC-GGUCGuCCCGa -3'
miRNA:   3'- -GACA-----AGGGGG----------CGCCGuUCGGC-GGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.