miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 13430 0.66 0.633108
Target:  5'- -cGcgUCCCCGgGGCccgcauuGGCCGguCCCGGa -3'
miRNA:   3'- gaCaaGGGGGCgCCGu------UCGGC--GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 13659 0.67 0.527139
Target:  5'- -----aCCCCGCGGCAc-CCGCcuCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGUucGGCG--GGCC- -5'
29398 5' -62.7 NC_006151.1 + 13938 0.66 0.58445
Target:  5'- ----aCCCCgGgGGCGGGCgC-CCCGGg -3'
miRNA:   3'- gacaaGGGGgCgCCGUUCG-GcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 15128 0.66 0.633108
Target:  5'- ---cUCUUUCGCGGCAucGCCGUCuCGGc -3'
miRNA:   3'- gacaAGGGGGCGCCGUu-CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 15237 0.7 0.40103
Target:  5'- -cGgcCCCCUGCuGGCAGGCCcugcuccagcucucGCCCGa -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCGG--------------CGGGCc -5'
29398 5' -62.7 NC_006151.1 + 15902 0.66 0.603862
Target:  5'- -cGcgCCCCgaCGCGGCccgccGCCGCCCc- -3'
miRNA:   3'- gaCaaGGGG--GCGCCGuu---CGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 18410 0.67 0.536563
Target:  5'- gCUGUcCCCgCCGgGGgaggaGGGCCGCCggCGGg -3'
miRNA:   3'- -GACAaGGG-GGCgCCg----UUCGGCGG--GCC- -5'
29398 5' -62.7 NC_006151.1 + 18530 0.67 0.530901
Target:  5'- -cGUccCCgCCCGCgucggcacccggaacGGCcgcgAGGCCGCCCGGc -3'
miRNA:   3'- gaCAa-GG-GGGCG---------------CCG----UUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 19285 0.66 0.603862
Target:  5'- -gGggCCCaCCGgGGCcAGCgGCgCGGg -3'
miRNA:   3'- gaCaaGGG-GGCgCCGuUCGgCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 21452 0.66 0.582514
Target:  5'- gUGgcCCCCgGCGGCGuggucccgcgucGCCGgCUCGGg -3'
miRNA:   3'- gACaaGGGGgCGCCGUu-----------CGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 21557 0.67 0.554623
Target:  5'- cCUGggCCUCgGCGaGCccgccgaGGGCCGCgCGGg -3'
miRNA:   3'- -GACaaGGGGgCGC-CG-------UUCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 24625 0.66 0.594143
Target:  5'- ---aUCCCgUGCagguaGGCGAGCCcgcggagcacgGCCCGGa -3'
miRNA:   3'- gacaAGGGgGCG-----CCGUUCGG-----------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 25446 0.66 0.58445
Target:  5'- ----cUCCCCGCGGCcgcCCGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGCCGuucGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 26340 0.66 0.623351
Target:  5'- ----gCCCgCCucacggggcgGCGGCGGGCCGCgUCGGg -3'
miRNA:   3'- gacaaGGG-GG----------CGCCGUUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 27336 0.66 0.603862
Target:  5'- gCUGcUCCCCgggacCGgGGUcguGGGCCgggGCCCGGg -3'
miRNA:   3'- -GACaAGGGG-----GCgCCG---UUCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 28315 0.66 0.58445
Target:  5'- -cGcgUCCCCGgGGCGcccGCC-CCCGGg -3'
miRNA:   3'- gaCaaGGGGGCgCCGUu--CGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 29077 0.69 0.44562
Target:  5'- -cGggCCCCgagacggcCGCGGCGA-CCGuCCCGGa -3'
miRNA:   3'- gaCaaGGGG--------GCGCCGUUcGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 30942 0.71 0.334306
Target:  5'- ----gCCCgCGCGGUAucgcGGCgGCCCGGg -3'
miRNA:   3'- gacaaGGGgGCGCCGU----UCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 31019 0.71 0.334306
Target:  5'- -gGUcgCCgCCGCGGCccucGCgGCCCGGg -3'
miRNA:   3'- gaCAa-GGgGGCGCCGuu--CGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 31223 0.68 0.481042
Target:  5'- -cGggCCCCC--GGCcGGCCGgCCCGGc -3'
miRNA:   3'- gaCaaGGGGGcgCCGuUCGGC-GGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.