miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 1692 0.66 0.633108
Target:  5'- ---cUCCgCCGCGGCc-GCCGCCg-- -3'
miRNA:   3'- gacaAGGgGGCGCCGuuCGGCGGgcc -5'
29398 5' -62.7 NC_006151.1 + 2288 0.72 0.286784
Target:  5'- -gGggCgCCCGCGGCGGcgacGgCGCCCGGg -3'
miRNA:   3'- gaCaaGgGGGCGCCGUU----CgGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 2466 0.73 0.262103
Target:  5'- -cGagCCCCCaGCGGUuGGCCGCgCGGu -3'
miRNA:   3'- gaCaaGGGGG-CGCCGuUCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 2854 0.73 0.262103
Target:  5'- gUGguagUCCCCCaCGGcCGGGCCGUCCGcGg -3'
miRNA:   3'- gACa---AGGGGGcGCC-GUUCGGCGGGC-C- -5'
29398 5' -62.7 NC_006151.1 + 3361 0.66 0.600944
Target:  5'- -cGggCCaCCUcgggcgggcaguagGCGGCGagGGCCGCCuCGGa -3'
miRNA:   3'- gaCaaGG-GGG--------------CGCCGU--UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 3624 0.77 0.144964
Target:  5'- gUGgccgUCCCCGCGGaGGGCCGCgCCGGa -3'
miRNA:   3'- gACaa--GGGGGCGCCgUUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 3688 0.67 0.536563
Target:  5'- -cGggCCCCgggcgCGCGGCGcuucuucuugcGCCGCUCGGg -3'
miRNA:   3'- gaCaaGGGG-----GCGCCGUu----------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 4388 0.67 0.555579
Target:  5'- ---cUCCCcggcgcggggguCCGCGGC--GCgGCCCGGg -3'
miRNA:   3'- gacaAGGG------------GGCGCCGuuCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 4786 0.66 0.603862
Target:  5'- -cGggCCCggCCGCGGCGcgguagcgGGCCgcgGCCUGGc -3'
miRNA:   3'- gaCaaGGG--GGCGCCGU--------UCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 6169 0.74 0.217442
Target:  5'- ----gCCUCgGCGGCGucgucggagaagaGGCCGCCCGGg -3'
miRNA:   3'- gacaaGGGGgCGCCGU-------------UCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 6281 0.71 0.334306
Target:  5'- cCUcUUCCUcggCCGCGGCGgcGGCCGCCaGGa -3'
miRNA:   3'- -GAcAAGGG---GGCGCCGU--UCGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 6855 0.68 0.499259
Target:  5'- ----gCCCCCGCGGCG-GCCaucuuGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGCCGUuCGG-----CGGGcc -5'
29398 5' -62.7 NC_006151.1 + 7013 0.83 0.055558
Target:  5'- aUGUccggCCCCCGCGGCGgccaucucGGCuCGCCCGGg -3'
miRNA:   3'- gACAa---GGGGGCGCCGU--------UCG-GCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 8289 0.67 0.549852
Target:  5'- gUG-UCCCCgCGCgGGCGccgcgucccgccccgAGCC-CCCGGg -3'
miRNA:   3'- gACaAGGGG-GCG-CCGU---------------UCGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 9481 0.69 0.463154
Target:  5'- -cGgcCCCCCGCGGCc-GCgGCgUGGg -3'
miRNA:   3'- gaCaaGGGGGCGCCGuuCGgCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 10552 0.68 0.480139
Target:  5'- -cGUUCCgCCCggcgcccaauggcGCGGCcggcucGGCgGCCCGGc -3'
miRNA:   3'- gaCAAGG-GGG-------------CGCCGu-----UCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 12668 0.67 0.546044
Target:  5'- ----gCCgCCGCGGCcgcAGCCGCCgCGa -3'
miRNA:   3'- gacaaGGgGGCGCCGu--UCGGCGG-GCc -5'
29398 5' -62.7 NC_006151.1 + 12837 0.66 0.594143
Target:  5'- ----cCCCCCGCGGCcacaccGAGCCuucuccGCgCGGu -3'
miRNA:   3'- gacaaGGGGGCGCCG------UUCGG------CGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 13017 0.77 0.152229
Target:  5'- cCUG-UCCCUCGgGGCGcGGCCGaCCCGGc -3'
miRNA:   3'- -GACaAGGGGGCgCCGU-UCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 13378 0.67 0.527139
Target:  5'- -----aCCCCGCGGCAc-CCGCcuCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGUucGGCG--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.